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Primers and copper responsive promoter design and data of real-time RT-PCR assay in filamentous fungus Trichoderma reesei
This data article contains data related to the research article entitled “Copper-mediated on-off control of gene expression in filamentous fungus Trichoderma reesei” (Wang et al., 2017) [1]. Four kinds of copper responsive promoters were designed. Quantitative PCR (qPCR) was performed to determine r...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5694953/ https://www.ncbi.nlm.nih.gov/pubmed/29188230 http://dx.doi.org/10.1016/j.dib.2017.11.018 |
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author | Wang, Wei Chen, Yumeng Wei, Dong-Zhi |
author_facet | Wang, Wei Chen, Yumeng Wei, Dong-Zhi |
author_sort | Wang, Wei |
collection | PubMed |
description | This data article contains data related to the research article entitled “Copper-mediated on-off control of gene expression in filamentous fungus Trichoderma reesei” (Wang et al., 2017) [1]. Four kinds of copper responsive promoters were designed. Quantitative PCR (qPCR) was performed to determine relative mRNA levels of red fluorescent protein gene (rfp) extracted from cells grown under different concentrations of CuSO(4). Three deletion vectors were constructed by using a copper-mediated self-excision cassette instead of a xylose-mediated self-excision cassette (Zhang et al., 2016) [2] to knock out xyn1, one of the two major specific endo-β-1,4-xylanases (Rauscher et al., 2006) [3], xyr1, the key transcriptional activator of cellulolytic and xylanolytic genes (Lichius et al., 2015) [4], and ace3, a factor essential for cellulase production (Häkkinen et al., 2014) [5]. This data article reports the primers, vector construction, and qPCR assay. |
format | Online Article Text |
id | pubmed-5694953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-56949532017-11-29 Primers and copper responsive promoter design and data of real-time RT-PCR assay in filamentous fungus Trichoderma reesei Wang, Wei Chen, Yumeng Wei, Dong-Zhi Data Brief Genetics, Genomics and Molecular Biology This data article contains data related to the research article entitled “Copper-mediated on-off control of gene expression in filamentous fungus Trichoderma reesei” (Wang et al., 2017) [1]. Four kinds of copper responsive promoters were designed. Quantitative PCR (qPCR) was performed to determine relative mRNA levels of red fluorescent protein gene (rfp) extracted from cells grown under different concentrations of CuSO(4). Three deletion vectors were constructed by using a copper-mediated self-excision cassette instead of a xylose-mediated self-excision cassette (Zhang et al., 2016) [2] to knock out xyn1, one of the two major specific endo-β-1,4-xylanases (Rauscher et al., 2006) [3], xyr1, the key transcriptional activator of cellulolytic and xylanolytic genes (Lichius et al., 2015) [4], and ace3, a factor essential for cellulase production (Häkkinen et al., 2014) [5]. This data article reports the primers, vector construction, and qPCR assay. Elsevier 2017-11-07 /pmc/articles/PMC5694953/ /pubmed/29188230 http://dx.doi.org/10.1016/j.dib.2017.11.018 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Genetics, Genomics and Molecular Biology Wang, Wei Chen, Yumeng Wei, Dong-Zhi Primers and copper responsive promoter design and data of real-time RT-PCR assay in filamentous fungus Trichoderma reesei |
title | Primers and copper responsive promoter design and data of real-time RT-PCR assay in filamentous fungus Trichoderma reesei |
title_full | Primers and copper responsive promoter design and data of real-time RT-PCR assay in filamentous fungus Trichoderma reesei |
title_fullStr | Primers and copper responsive promoter design and data of real-time RT-PCR assay in filamentous fungus Trichoderma reesei |
title_full_unstemmed | Primers and copper responsive promoter design and data of real-time RT-PCR assay in filamentous fungus Trichoderma reesei |
title_short | Primers and copper responsive promoter design and data of real-time RT-PCR assay in filamentous fungus Trichoderma reesei |
title_sort | primers and copper responsive promoter design and data of real-time rt-pcr assay in filamentous fungus trichoderma reesei |
topic | Genetics, Genomics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5694953/ https://www.ncbi.nlm.nih.gov/pubmed/29188230 http://dx.doi.org/10.1016/j.dib.2017.11.018 |
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