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Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis

Cancer/testis (CT) genes are excellent candidates for cancer immunotherapies because of their restrict expression in normal tissues and the capacity to elicit an immune response when expressed in tumor cells. In this study, we provide a genome-wide screen for CT genes with the identification of 745...

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Autores principales: da Silva, Vandeclecio Lira, Fonseca, André Faustino, Fonseca, Marbella, da Silva, Thayna Emilia, Coelho, Ana Carolina, Kroll, José Eduardo, de Souza, Jorge Estefano Santana, Stransky, Beatriz, de Souza, Gustavo Antonio, de Souza, Sandro José
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5696236/
https://www.ncbi.nlm.nih.gov/pubmed/29190970
http://dx.doi.org/10.18632/oncotarget.21715
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author da Silva, Vandeclecio Lira
Fonseca, André Faustino
Fonseca, Marbella
da Silva, Thayna Emilia
Coelho, Ana Carolina
Kroll, José Eduardo
de Souza, Jorge Estefano Santana
Stransky, Beatriz
de Souza, Gustavo Antonio
de Souza, Sandro José
author_facet da Silva, Vandeclecio Lira
Fonseca, André Faustino
Fonseca, Marbella
da Silva, Thayna Emilia
Coelho, Ana Carolina
Kroll, José Eduardo
de Souza, Jorge Estefano Santana
Stransky, Beatriz
de Souza, Gustavo Antonio
de Souza, Sandro José
author_sort da Silva, Vandeclecio Lira
collection PubMed
description Cancer/testis (CT) genes are excellent candidates for cancer immunotherapies because of their restrict expression in normal tissues and the capacity to elicit an immune response when expressed in tumor cells. In this study, we provide a genome-wide screen for CT genes with the identification of 745 putative CT genes. Comparison with a set of known CT genes shows that 201 new CT genes were identified. Integration of gene expression and clinical data led us to identify dozens of CT genes associated with either good or poor prognosis. For the CT genes related to good prognosis, we show that there is a direct relationship between CT gene expression and a signal for CD8+ cells infiltration for some tumor types, especially melanoma.
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spelling pubmed-56962362017-11-29 Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis da Silva, Vandeclecio Lira Fonseca, André Faustino Fonseca, Marbella da Silva, Thayna Emilia Coelho, Ana Carolina Kroll, José Eduardo de Souza, Jorge Estefano Santana Stransky, Beatriz de Souza, Gustavo Antonio de Souza, Sandro José Oncotarget Research Paper Cancer/testis (CT) genes are excellent candidates for cancer immunotherapies because of their restrict expression in normal tissues and the capacity to elicit an immune response when expressed in tumor cells. In this study, we provide a genome-wide screen for CT genes with the identification of 745 putative CT genes. Comparison with a set of known CT genes shows that 201 new CT genes were identified. Integration of gene expression and clinical data led us to identify dozens of CT genes associated with either good or poor prognosis. For the CT genes related to good prognosis, we show that there is a direct relationship between CT gene expression and a signal for CD8+ cells infiltration for some tumor types, especially melanoma. Impact Journals LLC 2017-10-10 /pmc/articles/PMC5696236/ /pubmed/29190970 http://dx.doi.org/10.18632/oncotarget.21715 Text en Copyright: © 2017 da Silva et al. http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Research Paper
da Silva, Vandeclecio Lira
Fonseca, André Faustino
Fonseca, Marbella
da Silva, Thayna Emilia
Coelho, Ana Carolina
Kroll, José Eduardo
de Souza, Jorge Estefano Santana
Stransky, Beatriz
de Souza, Gustavo Antonio
de Souza, Sandro José
Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis
title Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis
title_full Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis
title_fullStr Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis
title_full_unstemmed Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis
title_short Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis
title_sort genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5696236/
https://www.ncbi.nlm.nih.gov/pubmed/29190970
http://dx.doi.org/10.18632/oncotarget.21715
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