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Accurate thermal conductivities from optimally short molecular dynamics simulations
The evaluation of transport coefficients in extended systems, such as thermal conductivity or shear viscosity, is known to require impractically long simulations, thus calling for a paradigm shift that would allow to deploy state-of-the-art quantum simulation methods. We introduce a new method to co...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5696481/ https://www.ncbi.nlm.nih.gov/pubmed/29158529 http://dx.doi.org/10.1038/s41598-017-15843-2 |
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author | Ercole, Loris Marcolongo, Aris Baroni, Stefano |
author_facet | Ercole, Loris Marcolongo, Aris Baroni, Stefano |
author_sort | Ercole, Loris |
collection | PubMed |
description | The evaluation of transport coefficients in extended systems, such as thermal conductivity or shear viscosity, is known to require impractically long simulations, thus calling for a paradigm shift that would allow to deploy state-of-the-art quantum simulation methods. We introduce a new method to compute these coefficients from optimally short molecular dynamics simulations, based on the Green-Kubo theory of linear response and the cepstral analysis of time series. Information from the full sample power spectrum of the relevant current for a single and relatively short trajectory is leveraged to evaluate and optimally reduce the noise affecting its zero-frequency value, whose expectation is proportional to the corresponding conductivity. Our method is unbiased and consistent, in that both the resulting bias and statistical error can be made arbitrarily small in the long-time limit. A simple data-analysis protocol is proposed and validated with the calculation of thermal conductivities in the paradigmatic cases of elemental and molecular fluids (liquid Ar and H(2)O) and of crystalline and glassy solids (MgO and a-SiO(2)). We find that simulation times of one to a few hundred picoseconds are sufficient in these systems to achieve an accuracy of the order of 10% on the estimated thermal conductivities. |
format | Online Article Text |
id | pubmed-5696481 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-56964812017-11-29 Accurate thermal conductivities from optimally short molecular dynamics simulations Ercole, Loris Marcolongo, Aris Baroni, Stefano Sci Rep Article The evaluation of transport coefficients in extended systems, such as thermal conductivity or shear viscosity, is known to require impractically long simulations, thus calling for a paradigm shift that would allow to deploy state-of-the-art quantum simulation methods. We introduce a new method to compute these coefficients from optimally short molecular dynamics simulations, based on the Green-Kubo theory of linear response and the cepstral analysis of time series. Information from the full sample power spectrum of the relevant current for a single and relatively short trajectory is leveraged to evaluate and optimally reduce the noise affecting its zero-frequency value, whose expectation is proportional to the corresponding conductivity. Our method is unbiased and consistent, in that both the resulting bias and statistical error can be made arbitrarily small in the long-time limit. A simple data-analysis protocol is proposed and validated with the calculation of thermal conductivities in the paradigmatic cases of elemental and molecular fluids (liquid Ar and H(2)O) and of crystalline and glassy solids (MgO and a-SiO(2)). We find that simulation times of one to a few hundred picoseconds are sufficient in these systems to achieve an accuracy of the order of 10% on the estimated thermal conductivities. Nature Publishing Group UK 2017-11-20 /pmc/articles/PMC5696481/ /pubmed/29158529 http://dx.doi.org/10.1038/s41598-017-15843-2 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Ercole, Loris Marcolongo, Aris Baroni, Stefano Accurate thermal conductivities from optimally short molecular dynamics simulations |
title | Accurate thermal conductivities from optimally short molecular dynamics simulations |
title_full | Accurate thermal conductivities from optimally short molecular dynamics simulations |
title_fullStr | Accurate thermal conductivities from optimally short molecular dynamics simulations |
title_full_unstemmed | Accurate thermal conductivities from optimally short molecular dynamics simulations |
title_short | Accurate thermal conductivities from optimally short molecular dynamics simulations |
title_sort | accurate thermal conductivities from optimally short molecular dynamics simulations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5696481/ https://www.ncbi.nlm.nih.gov/pubmed/29158529 http://dx.doi.org/10.1038/s41598-017-15843-2 |
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