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Deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool

The NMR chemical shifts of a substance in a complex mixture strongly depend on the composition of the mixture itself, as many weak interactions occur that are hardly predictable. Chemical shift variability is the major obstacle to automatically assigning, and subsequently quantitating, metabolite si...

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Autores principales: Takis, Panteleimon G., Schäfer, Hartmut, Spraul, Manfred, Luchinat, Claudio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5698486/
https://www.ncbi.nlm.nih.gov/pubmed/29162796
http://dx.doi.org/10.1038/s41467-017-01587-0
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author Takis, Panteleimon G.
Schäfer, Hartmut
Spraul, Manfred
Luchinat, Claudio
author_facet Takis, Panteleimon G.
Schäfer, Hartmut
Spraul, Manfred
Luchinat, Claudio
author_sort Takis, Panteleimon G.
collection PubMed
description The NMR chemical shifts of a substance in a complex mixture strongly depend on the composition of the mixture itself, as many weak interactions occur that are hardly predictable. Chemical shift variability is the major obstacle to automatically assigning, and subsequently quantitating, metabolite signals in body fluids, particularly urine. Here we demonstrate that the chemical shifts of signals in urine are actually predictable. This is achieved by constructing ca. 4000 artificial mixtures where the concentrations of 52 most abundant urine metabolites—including 11 inorganic ions—are varied, to sparsely but efficiently populate an N-dimensional concentration matrix. A strong relationship is established between the concentration matrix and the chemical shift matrix, so that chemical shifts of > 90 metabolite signals can be accurately predicted in real urine samples. The concentrations of the invisible inorganic ions are also accurately predicted, along with those of albumin and of several other abundant urine components.
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spelling pubmed-56984862017-11-24 Deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool Takis, Panteleimon G. Schäfer, Hartmut Spraul, Manfred Luchinat, Claudio Nat Commun Article The NMR chemical shifts of a substance in a complex mixture strongly depend on the composition of the mixture itself, as many weak interactions occur that are hardly predictable. Chemical shift variability is the major obstacle to automatically assigning, and subsequently quantitating, metabolite signals in body fluids, particularly urine. Here we demonstrate that the chemical shifts of signals in urine are actually predictable. This is achieved by constructing ca. 4000 artificial mixtures where the concentrations of 52 most abundant urine metabolites—including 11 inorganic ions—are varied, to sparsely but efficiently populate an N-dimensional concentration matrix. A strong relationship is established between the concentration matrix and the chemical shift matrix, so that chemical shifts of > 90 metabolite signals can be accurately predicted in real urine samples. The concentrations of the invisible inorganic ions are also accurately predicted, along with those of albumin and of several other abundant urine components. Nature Publishing Group UK 2017-11-21 /pmc/articles/PMC5698486/ /pubmed/29162796 http://dx.doi.org/10.1038/s41467-017-01587-0 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Takis, Panteleimon G.
Schäfer, Hartmut
Spraul, Manfred
Luchinat, Claudio
Deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool
title Deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool
title_full Deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool
title_fullStr Deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool
title_full_unstemmed Deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool
title_short Deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool
title_sort deconvoluting interrelationships between concentrations and chemical shifts in urine provides a powerful analysis tool
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5698486/
https://www.ncbi.nlm.nih.gov/pubmed/29162796
http://dx.doi.org/10.1038/s41467-017-01587-0
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