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A tutorial on bridge sampling

The marginal likelihood plays an important role in many areas of Bayesian statistics such as parameter estimation, model comparison, and model averaging. In most applications, however, the marginal likelihood is not analytically tractable and must be approximated using numerical methods. Here we pro...

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Detalles Bibliográficos
Autores principales: Gronau, Quentin F., Sarafoglou, Alexandra, Matzke, Dora, Ly, Alexander, Boehm, Udo, Marsman, Maarten, Leslie, David S., Forster, Jonathan J., Wagenmakers, Eric-Jan, Steingroever, Helen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academic Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5699790/
https://www.ncbi.nlm.nih.gov/pubmed/29200501
http://dx.doi.org/10.1016/j.jmp.2017.09.005
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author Gronau, Quentin F.
Sarafoglou, Alexandra
Matzke, Dora
Ly, Alexander
Boehm, Udo
Marsman, Maarten
Leslie, David S.
Forster, Jonathan J.
Wagenmakers, Eric-Jan
Steingroever, Helen
author_facet Gronau, Quentin F.
Sarafoglou, Alexandra
Matzke, Dora
Ly, Alexander
Boehm, Udo
Marsman, Maarten
Leslie, David S.
Forster, Jonathan J.
Wagenmakers, Eric-Jan
Steingroever, Helen
author_sort Gronau, Quentin F.
collection PubMed
description The marginal likelihood plays an important role in many areas of Bayesian statistics such as parameter estimation, model comparison, and model averaging. In most applications, however, the marginal likelihood is not analytically tractable and must be approximated using numerical methods. Here we provide a tutorial on bridge sampling (Bennett, 1976; Meng & Wong, 1996), a reliable and relatively straightforward sampling method that allows researchers to obtain the marginal likelihood for models of varying complexity. First, we introduce bridge sampling and three related sampling methods using the beta-binomial model as a running example. We then apply bridge sampling to estimate the marginal likelihood for the Expectancy Valence (EV) model—a popular model for reinforcement learning. Our results indicate that bridge sampling provides accurate estimates for both a single participant and a hierarchical version of the EV model. We conclude that bridge sampling is an attractive method for mathematical psychologists who typically aim to approximate the marginal likelihood for a limited set of possibly high-dimensional models.
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spelling pubmed-56997902017-12-01 A tutorial on bridge sampling Gronau, Quentin F. Sarafoglou, Alexandra Matzke, Dora Ly, Alexander Boehm, Udo Marsman, Maarten Leslie, David S. Forster, Jonathan J. Wagenmakers, Eric-Jan Steingroever, Helen J Math Psychol Article The marginal likelihood plays an important role in many areas of Bayesian statistics such as parameter estimation, model comparison, and model averaging. In most applications, however, the marginal likelihood is not analytically tractable and must be approximated using numerical methods. Here we provide a tutorial on bridge sampling (Bennett, 1976; Meng & Wong, 1996), a reliable and relatively straightforward sampling method that allows researchers to obtain the marginal likelihood for models of varying complexity. First, we introduce bridge sampling and three related sampling methods using the beta-binomial model as a running example. We then apply bridge sampling to estimate the marginal likelihood for the Expectancy Valence (EV) model—a popular model for reinforcement learning. Our results indicate that bridge sampling provides accurate estimates for both a single participant and a hierarchical version of the EV model. We conclude that bridge sampling is an attractive method for mathematical psychologists who typically aim to approximate the marginal likelihood for a limited set of possibly high-dimensional models. Academic Press 2017-12 /pmc/articles/PMC5699790/ /pubmed/29200501 http://dx.doi.org/10.1016/j.jmp.2017.09.005 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gronau, Quentin F.
Sarafoglou, Alexandra
Matzke, Dora
Ly, Alexander
Boehm, Udo
Marsman, Maarten
Leslie, David S.
Forster, Jonathan J.
Wagenmakers, Eric-Jan
Steingroever, Helen
A tutorial on bridge sampling
title A tutorial on bridge sampling
title_full A tutorial on bridge sampling
title_fullStr A tutorial on bridge sampling
title_full_unstemmed A tutorial on bridge sampling
title_short A tutorial on bridge sampling
title_sort tutorial on bridge sampling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5699790/
https://www.ncbi.nlm.nih.gov/pubmed/29200501
http://dx.doi.org/10.1016/j.jmp.2017.09.005
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