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A tutorial on bridge sampling
The marginal likelihood plays an important role in many areas of Bayesian statistics such as parameter estimation, model comparison, and model averaging. In most applications, however, the marginal likelihood is not analytically tractable and must be approximated using numerical methods. Here we pro...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Academic Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5699790/ https://www.ncbi.nlm.nih.gov/pubmed/29200501 http://dx.doi.org/10.1016/j.jmp.2017.09.005 |
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author | Gronau, Quentin F. Sarafoglou, Alexandra Matzke, Dora Ly, Alexander Boehm, Udo Marsman, Maarten Leslie, David S. Forster, Jonathan J. Wagenmakers, Eric-Jan Steingroever, Helen |
author_facet | Gronau, Quentin F. Sarafoglou, Alexandra Matzke, Dora Ly, Alexander Boehm, Udo Marsman, Maarten Leslie, David S. Forster, Jonathan J. Wagenmakers, Eric-Jan Steingroever, Helen |
author_sort | Gronau, Quentin F. |
collection | PubMed |
description | The marginal likelihood plays an important role in many areas of Bayesian statistics such as parameter estimation, model comparison, and model averaging. In most applications, however, the marginal likelihood is not analytically tractable and must be approximated using numerical methods. Here we provide a tutorial on bridge sampling (Bennett, 1976; Meng & Wong, 1996), a reliable and relatively straightforward sampling method that allows researchers to obtain the marginal likelihood for models of varying complexity. First, we introduce bridge sampling and three related sampling methods using the beta-binomial model as a running example. We then apply bridge sampling to estimate the marginal likelihood for the Expectancy Valence (EV) model—a popular model for reinforcement learning. Our results indicate that bridge sampling provides accurate estimates for both a single participant and a hierarchical version of the EV model. We conclude that bridge sampling is an attractive method for mathematical psychologists who typically aim to approximate the marginal likelihood for a limited set of possibly high-dimensional models. |
format | Online Article Text |
id | pubmed-5699790 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Academic Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-56997902017-12-01 A tutorial on bridge sampling Gronau, Quentin F. Sarafoglou, Alexandra Matzke, Dora Ly, Alexander Boehm, Udo Marsman, Maarten Leslie, David S. Forster, Jonathan J. Wagenmakers, Eric-Jan Steingroever, Helen J Math Psychol Article The marginal likelihood plays an important role in many areas of Bayesian statistics such as parameter estimation, model comparison, and model averaging. In most applications, however, the marginal likelihood is not analytically tractable and must be approximated using numerical methods. Here we provide a tutorial on bridge sampling (Bennett, 1976; Meng & Wong, 1996), a reliable and relatively straightforward sampling method that allows researchers to obtain the marginal likelihood for models of varying complexity. First, we introduce bridge sampling and three related sampling methods using the beta-binomial model as a running example. We then apply bridge sampling to estimate the marginal likelihood for the Expectancy Valence (EV) model—a popular model for reinforcement learning. Our results indicate that bridge sampling provides accurate estimates for both a single participant and a hierarchical version of the EV model. We conclude that bridge sampling is an attractive method for mathematical psychologists who typically aim to approximate the marginal likelihood for a limited set of possibly high-dimensional models. Academic Press 2017-12 /pmc/articles/PMC5699790/ /pubmed/29200501 http://dx.doi.org/10.1016/j.jmp.2017.09.005 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Gronau, Quentin F. Sarafoglou, Alexandra Matzke, Dora Ly, Alexander Boehm, Udo Marsman, Maarten Leslie, David S. Forster, Jonathan J. Wagenmakers, Eric-Jan Steingroever, Helen A tutorial on bridge sampling |
title | A tutorial on bridge sampling |
title_full | A tutorial on bridge sampling |
title_fullStr | A tutorial on bridge sampling |
title_full_unstemmed | A tutorial on bridge sampling |
title_short | A tutorial on bridge sampling |
title_sort | tutorial on bridge sampling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5699790/ https://www.ncbi.nlm.nih.gov/pubmed/29200501 http://dx.doi.org/10.1016/j.jmp.2017.09.005 |
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