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Single Nucleotide Polymorphism Genotyping in Single‐Molecule Electronic Circuits

Establishing low‐cost, high‐throughput, simple, and accurate single nucleotide polymorphism (SNP) genotyping techniques is beneficial for understanding the intrinsic relationship between individual genetic variations and their biological functions on a genomic scale. Here, a straightforward and reli...

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Detalles Bibliográficos
Autores principales: He, Gen, Li, Jie, Qi, Chuanmin, Guo, Xuefeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700462/
https://www.ncbi.nlm.nih.gov/pubmed/29201610
http://dx.doi.org/10.1002/advs.201700158
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author He, Gen
Li, Jie
Qi, Chuanmin
Guo, Xuefeng
author_facet He, Gen
Li, Jie
Qi, Chuanmin
Guo, Xuefeng
author_sort He, Gen
collection PubMed
description Establishing low‐cost, high‐throughput, simple, and accurate single nucleotide polymorphism (SNP) genotyping techniques is beneficial for understanding the intrinsic relationship between individual genetic variations and their biological functions on a genomic scale. Here, a straightforward and reliable single‐molecule approach is demonstrated for precise SNP authentication by directly measuring the fluctuations in electrical signals in an electronic circuit, which is fabricated from a high‐gain field‐effect silicon nanowire decorated with a single hairpin DNA, in the presence of different target DNAs. By simply comparing the proportion difference of a probe‐target duplex structure throughout the process, this study implements allele‐specific and accurate SNP detection. These results are supported by the statistical analyses of different dynamic parameters such as the mean lifetime and the unwinding probability of the duplex conformation. In comparison with conventional polymerase chain reaction and optical methods, this convenient and label‐free method is complementary to existing optical methods and also shows several advantages, such as simple operation and no requirement for fluorescent labeling, thus promising a futuristic route toward the next‐generation genotyping technique.
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spelling pubmed-57004622017-11-30 Single Nucleotide Polymorphism Genotyping in Single‐Molecule Electronic Circuits He, Gen Li, Jie Qi, Chuanmin Guo, Xuefeng Adv Sci (Weinh) Full Papers Establishing low‐cost, high‐throughput, simple, and accurate single nucleotide polymorphism (SNP) genotyping techniques is beneficial for understanding the intrinsic relationship between individual genetic variations and their biological functions on a genomic scale. Here, a straightforward and reliable single‐molecule approach is demonstrated for precise SNP authentication by directly measuring the fluctuations in electrical signals in an electronic circuit, which is fabricated from a high‐gain field‐effect silicon nanowire decorated with a single hairpin DNA, in the presence of different target DNAs. By simply comparing the proportion difference of a probe‐target duplex structure throughout the process, this study implements allele‐specific and accurate SNP detection. These results are supported by the statistical analyses of different dynamic parameters such as the mean lifetime and the unwinding probability of the duplex conformation. In comparison with conventional polymerase chain reaction and optical methods, this convenient and label‐free method is complementary to existing optical methods and also shows several advantages, such as simple operation and no requirement for fluorescent labeling, thus promising a futuristic route toward the next‐generation genotyping technique. John Wiley and Sons Inc. 2017-07-26 /pmc/articles/PMC5700462/ /pubmed/29201610 http://dx.doi.org/10.1002/advs.201700158 Text en © 2017 The Authors. Published by WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
He, Gen
Li, Jie
Qi, Chuanmin
Guo, Xuefeng
Single Nucleotide Polymorphism Genotyping in Single‐Molecule Electronic Circuits
title Single Nucleotide Polymorphism Genotyping in Single‐Molecule Electronic Circuits
title_full Single Nucleotide Polymorphism Genotyping in Single‐Molecule Electronic Circuits
title_fullStr Single Nucleotide Polymorphism Genotyping in Single‐Molecule Electronic Circuits
title_full_unstemmed Single Nucleotide Polymorphism Genotyping in Single‐Molecule Electronic Circuits
title_short Single Nucleotide Polymorphism Genotyping in Single‐Molecule Electronic Circuits
title_sort single nucleotide polymorphism genotyping in single‐molecule electronic circuits
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700462/
https://www.ncbi.nlm.nih.gov/pubmed/29201610
http://dx.doi.org/10.1002/advs.201700158
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