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Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep

Circular RNAs (circRNAs) are a class of animal non-coding RNAs and play an impor-tant role in animal growth and development. However, the expression and function of circRNAs in the pituitary gland of sheep are unclear. Transcriptome profiling of circRNAs in the pituitary gland of sheep may enable us...

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Autores principales: Li, Cunyuan, Li, Xiaoyue, Ma, Qiman, Zhang, Xiangyu, Cao, Yang, Yao, Yang, You, Shuang, Wang, Dawei, Quan, Renzhe, Hou, Xiaoxu, Liu, Zhijin, Zhan, Qianqian, Liu, Li, Zhang, Mengdan, Yu, Shuting, Ni, Wei, Hu, Shengwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700919/
https://www.ncbi.nlm.nih.gov/pubmed/29170496
http://dx.doi.org/10.1038/s41598-017-16344-y
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author Li, Cunyuan
Li, Xiaoyue
Ma, Qiman
Zhang, Xiangyu
Cao, Yang
Yao, Yang
You, Shuang
Wang, Dawei
Quan, Renzhe
Hou, Xiaoxu
Liu, Zhijin
Zhan, Qianqian
Liu, Li
Zhang, Mengdan
Yu, Shuting
Ni, Wei
Hu, Shengwei
author_facet Li, Cunyuan
Li, Xiaoyue
Ma, Qiman
Zhang, Xiangyu
Cao, Yang
Yao, Yang
You, Shuang
Wang, Dawei
Quan, Renzhe
Hou, Xiaoxu
Liu, Zhijin
Zhan, Qianqian
Liu, Li
Zhang, Mengdan
Yu, Shuting
Ni, Wei
Hu, Shengwei
author_sort Li, Cunyuan
collection PubMed
description Circular RNAs (circRNAs) are a class of animal non-coding RNAs and play an impor-tant role in animal growth and development. However, the expression and function of circRNAs in the pituitary gland of sheep are unclear. Transcriptome profiling of circRNAs in the pituitary gland of sheep may enable us to understand their biological functions. In the present study, we identified 10,226 circRNAs from RNA-seq data in the pituitary gland of prenatal and postnatal sheep. Reverse transcription PCR and DNA sequencing analysis confirmed the presence of several circRNAs. Real-time RT-PCR analysis showed that sheep circRNAs are resistant to RNase R digestion and are expressed in prenatal and postnatal pituitary glands. GO and KEGG enrichment analysis showed that host genes of differentially expressed circRNAs are involved in the regulation of hormone secretion as well as in several pathways related to these processes. We determined that numerous circRNAs interact with pituitary-specific miRNAs that are involved in the biologic functions of the pituitary gland. Moreover, several circRNAs contain at least one IRES element and open reading frame, indicating their potential to encode proteins. Our study provides comprehensive expression profiles of circRNAs in the pituitary gland, thereby offering a valuable resource for circRNA biology in sheep.
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spelling pubmed-57009192017-11-30 Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep Li, Cunyuan Li, Xiaoyue Ma, Qiman Zhang, Xiangyu Cao, Yang Yao, Yang You, Shuang Wang, Dawei Quan, Renzhe Hou, Xiaoxu Liu, Zhijin Zhan, Qianqian Liu, Li Zhang, Mengdan Yu, Shuting Ni, Wei Hu, Shengwei Sci Rep Article Circular RNAs (circRNAs) are a class of animal non-coding RNAs and play an impor-tant role in animal growth and development. However, the expression and function of circRNAs in the pituitary gland of sheep are unclear. Transcriptome profiling of circRNAs in the pituitary gland of sheep may enable us to understand their biological functions. In the present study, we identified 10,226 circRNAs from RNA-seq data in the pituitary gland of prenatal and postnatal sheep. Reverse transcription PCR and DNA sequencing analysis confirmed the presence of several circRNAs. Real-time RT-PCR analysis showed that sheep circRNAs are resistant to RNase R digestion and are expressed in prenatal and postnatal pituitary glands. GO and KEGG enrichment analysis showed that host genes of differentially expressed circRNAs are involved in the regulation of hormone secretion as well as in several pathways related to these processes. We determined that numerous circRNAs interact with pituitary-specific miRNAs that are involved in the biologic functions of the pituitary gland. Moreover, several circRNAs contain at least one IRES element and open reading frame, indicating their potential to encode proteins. Our study provides comprehensive expression profiles of circRNAs in the pituitary gland, thereby offering a valuable resource for circRNA biology in sheep. Nature Publishing Group UK 2017-11-23 /pmc/articles/PMC5700919/ /pubmed/29170496 http://dx.doi.org/10.1038/s41598-017-16344-y Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Li, Cunyuan
Li, Xiaoyue
Ma, Qiman
Zhang, Xiangyu
Cao, Yang
Yao, Yang
You, Shuang
Wang, Dawei
Quan, Renzhe
Hou, Xiaoxu
Liu, Zhijin
Zhan, Qianqian
Liu, Li
Zhang, Mengdan
Yu, Shuting
Ni, Wei
Hu, Shengwei
Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep
title Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep
title_full Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep
title_fullStr Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep
title_full_unstemmed Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep
title_short Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep
title_sort genome-wide analysis of circular rnas in prenatal and postnatal pituitary glands of sheep
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700919/
https://www.ncbi.nlm.nih.gov/pubmed/29170496
http://dx.doi.org/10.1038/s41598-017-16344-y
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