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Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli
The inherent stochasticity of molecular reactions prevents us from predicting the exact state of single-cells in a population. However, when a population grows at steady-state, the probability to observe a cell with particular combinations of properties is fixed. Here we validate and exploit existin...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700928/ https://www.ncbi.nlm.nih.gov/pubmed/29170466 http://dx.doi.org/10.1038/s41598-017-15895-4 |
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author | van Heerden, Johan H. Kempe, Hermannus Doerr, Anne Maarleveld, Timo Nordholt, Niclas Bruggeman, Frank J. |
author_facet | van Heerden, Johan H. Kempe, Hermannus Doerr, Anne Maarleveld, Timo Nordholt, Niclas Bruggeman, Frank J. |
author_sort | van Heerden, Johan H. |
collection | PubMed |
description | The inherent stochasticity of molecular reactions prevents us from predicting the exact state of single-cells in a population. However, when a population grows at steady-state, the probability to observe a cell with particular combinations of properties is fixed. Here we validate and exploit existing theory on the statistics of single-cell growth in order to predict the probability of phenotypic characteristics such as cell-cycle times, volumes, accuracy of division and cell-age distributions, using real-time imaging data for Bacillus subtilis and Escherichia coli. Our results show that single-cell growth-statistics can accurately be predicted from a few basic measurements. These equations relate different phenotypic characteristics, and can therefore be used in consistency tests of experimental single-cell growth data and prediction of single-cell statistics. We also exploit these statistical relations in the development of a fast stochastic-simulation algorithm of single-cell growth and protein expression. This algorithm greatly reduces computational burden, by recovering the statistics of growing cell-populations from the simulation of only one of its lineages. Our approach is validated by comparison of simulations and experimental data. This work illustrates a methodology for the prediction, analysis and tests of consistency of single-cell growth and protein expression data from a few basic statistical principles. |
format | Online Article Text |
id | pubmed-5700928 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57009282017-11-30 Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli van Heerden, Johan H. Kempe, Hermannus Doerr, Anne Maarleveld, Timo Nordholt, Niclas Bruggeman, Frank J. Sci Rep Article The inherent stochasticity of molecular reactions prevents us from predicting the exact state of single-cells in a population. However, when a population grows at steady-state, the probability to observe a cell with particular combinations of properties is fixed. Here we validate and exploit existing theory on the statistics of single-cell growth in order to predict the probability of phenotypic characteristics such as cell-cycle times, volumes, accuracy of division and cell-age distributions, using real-time imaging data for Bacillus subtilis and Escherichia coli. Our results show that single-cell growth-statistics can accurately be predicted from a few basic measurements. These equations relate different phenotypic characteristics, and can therefore be used in consistency tests of experimental single-cell growth data and prediction of single-cell statistics. We also exploit these statistical relations in the development of a fast stochastic-simulation algorithm of single-cell growth and protein expression. This algorithm greatly reduces computational burden, by recovering the statistics of growing cell-populations from the simulation of only one of its lineages. Our approach is validated by comparison of simulations and experimental data. This work illustrates a methodology for the prediction, analysis and tests of consistency of single-cell growth and protein expression data from a few basic statistical principles. Nature Publishing Group UK 2017-11-23 /pmc/articles/PMC5700928/ /pubmed/29170466 http://dx.doi.org/10.1038/s41598-017-15895-4 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article van Heerden, Johan H. Kempe, Hermannus Doerr, Anne Maarleveld, Timo Nordholt, Niclas Bruggeman, Frank J. Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli |
title | Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli |
title_full | Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli |
title_fullStr | Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli |
title_full_unstemmed | Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli |
title_short | Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli |
title_sort | statistics and simulation of growth of single bacterial cells: illustrations with b. subtilis and e. coli |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700928/ https://www.ncbi.nlm.nih.gov/pubmed/29170466 http://dx.doi.org/10.1038/s41598-017-15895-4 |
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