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Integrated Proteomic and Metabolomic prediction of Term Preeclampsia
Term preeclampsia (tPE), ≥37 weeks, is the most common form of PE and the most difficult to predict. Little is known about its pathogenesis. This study aims to elucidate the pathogenesis and assess early prediction of tPE using serial integrated metabolomic and proteomic systems biology approaches....
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700929/ https://www.ncbi.nlm.nih.gov/pubmed/29170520 http://dx.doi.org/10.1038/s41598-017-15882-9 |
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author | Bahado-Singh, Ray Poon, Liona C. Yilmaz, Ali Syngelaki, Argyro Turkoglu, Onur Kumar, Praveen Kirma, Joseph Allos, Matthew Accurti, Veronica Li, Jiansheng Zhao, Peng Graham, Stewart F. Cool, David R. Nicolaides, Kypros |
author_facet | Bahado-Singh, Ray Poon, Liona C. Yilmaz, Ali Syngelaki, Argyro Turkoglu, Onur Kumar, Praveen Kirma, Joseph Allos, Matthew Accurti, Veronica Li, Jiansheng Zhao, Peng Graham, Stewart F. Cool, David R. Nicolaides, Kypros |
author_sort | Bahado-Singh, Ray |
collection | PubMed |
description | Term preeclampsia (tPE), ≥37 weeks, is the most common form of PE and the most difficult to predict. Little is known about its pathogenesis. This study aims to elucidate the pathogenesis and assess early prediction of tPE using serial integrated metabolomic and proteomic systems biology approaches. Serial first- (11–14 weeks) and third-trimester (30–34 weeks) serum samples were analyzed using targeted metabolomic ((1)H NMR and DI-LC-MS/MS) and proteomic (MALDI-TOF/TOF-MS) platforms. We analyzed 35 tPE cases and 63 controls. Serial first- (sphingomyelin C18:1 and urea) and third-trimester (hexose and citrate) metabolite screening predicted tPE with an area under the receiver operating characteristic curve (AUC) (95% CI) = 0.817 (0.732–0.902) and a sensitivity of 81.6% and specificity of 71.0%. Serial first [TATA box binding protein-associated factor (TBP)] and third-trimester [Testis-expressed sequence 15 protein (TEX15)] protein biomarkers highly accurately predicted tPE with an AUC (95% CI) of 0.987 (0.961–1.000), sensitivity 100% and specificity 98.4%. Integrated pathway over-representation analysis combining metabolomic and proteomic data revealed significant alterations in signal transduction, G protein coupled receptors, serotonin and glycosaminoglycan metabolisms among others. This is the first report of serial integrated and combined metabolomic and proteomic analysis of tPE. High predictive accuracy and potentially important pathogenic information were achieved. |
format | Online Article Text |
id | pubmed-5700929 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57009292017-11-30 Integrated Proteomic and Metabolomic prediction of Term Preeclampsia Bahado-Singh, Ray Poon, Liona C. Yilmaz, Ali Syngelaki, Argyro Turkoglu, Onur Kumar, Praveen Kirma, Joseph Allos, Matthew Accurti, Veronica Li, Jiansheng Zhao, Peng Graham, Stewart F. Cool, David R. Nicolaides, Kypros Sci Rep Article Term preeclampsia (tPE), ≥37 weeks, is the most common form of PE and the most difficult to predict. Little is known about its pathogenesis. This study aims to elucidate the pathogenesis and assess early prediction of tPE using serial integrated metabolomic and proteomic systems biology approaches. Serial first- (11–14 weeks) and third-trimester (30–34 weeks) serum samples were analyzed using targeted metabolomic ((1)H NMR and DI-LC-MS/MS) and proteomic (MALDI-TOF/TOF-MS) platforms. We analyzed 35 tPE cases and 63 controls. Serial first- (sphingomyelin C18:1 and urea) and third-trimester (hexose and citrate) metabolite screening predicted tPE with an area under the receiver operating characteristic curve (AUC) (95% CI) = 0.817 (0.732–0.902) and a sensitivity of 81.6% and specificity of 71.0%. Serial first [TATA box binding protein-associated factor (TBP)] and third-trimester [Testis-expressed sequence 15 protein (TEX15)] protein biomarkers highly accurately predicted tPE with an AUC (95% CI) of 0.987 (0.961–1.000), sensitivity 100% and specificity 98.4%. Integrated pathway over-representation analysis combining metabolomic and proteomic data revealed significant alterations in signal transduction, G protein coupled receptors, serotonin and glycosaminoglycan metabolisms among others. This is the first report of serial integrated and combined metabolomic and proteomic analysis of tPE. High predictive accuracy and potentially important pathogenic information were achieved. Nature Publishing Group UK 2017-11-23 /pmc/articles/PMC5700929/ /pubmed/29170520 http://dx.doi.org/10.1038/s41598-017-15882-9 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Bahado-Singh, Ray Poon, Liona C. Yilmaz, Ali Syngelaki, Argyro Turkoglu, Onur Kumar, Praveen Kirma, Joseph Allos, Matthew Accurti, Veronica Li, Jiansheng Zhao, Peng Graham, Stewart F. Cool, David R. Nicolaides, Kypros Integrated Proteomic and Metabolomic prediction of Term Preeclampsia |
title | Integrated Proteomic and Metabolomic prediction of Term Preeclampsia |
title_full | Integrated Proteomic and Metabolomic prediction of Term Preeclampsia |
title_fullStr | Integrated Proteomic and Metabolomic prediction of Term Preeclampsia |
title_full_unstemmed | Integrated Proteomic and Metabolomic prediction of Term Preeclampsia |
title_short | Integrated Proteomic and Metabolomic prediction of Term Preeclampsia |
title_sort | integrated proteomic and metabolomic prediction of term preeclampsia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700929/ https://www.ncbi.nlm.nih.gov/pubmed/29170520 http://dx.doi.org/10.1038/s41598-017-15882-9 |
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