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Taxonomic Classification for Living Organisms Using Convolutional Neural Networks

Taxonomic classification has a wide-range of applications such as finding out more about evolutionary history. Compared to the estimated number of organisms that nature harbors, humanity does not have a thorough comprehension of to which specific classes they belong. The classification of living org...

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Detalles Bibliográficos
Autores principales: Khawaldeh, Saed, Pervaiz, Usama, Elsharnoby, Mohammed, Alchalabi, Alaa Eddin, Al-Zubi, Nayel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704239/
https://www.ncbi.nlm.nih.gov/pubmed/29149087
http://dx.doi.org/10.3390/genes8110326
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author Khawaldeh, Saed
Pervaiz, Usama
Elsharnoby, Mohammed
Alchalabi, Alaa Eddin
Al-Zubi, Nayel
author_facet Khawaldeh, Saed
Pervaiz, Usama
Elsharnoby, Mohammed
Alchalabi, Alaa Eddin
Al-Zubi, Nayel
author_sort Khawaldeh, Saed
collection PubMed
description Taxonomic classification has a wide-range of applications such as finding out more about evolutionary history. Compared to the estimated number of organisms that nature harbors, humanity does not have a thorough comprehension of to which specific classes they belong. The classification of living organisms can be done in many machine learning techniques. However, in this study, this is performed using convolutional neural networks. Moreover, a DNA encoding technique is incorporated in the algorithm to increase performance and avoid misclassifications. The algorithm proposed outperformed the state of the art algorithms in terms of accuracy and sensitivity, which illustrates a high potential for using it in many other applications in genome analysis.
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spelling pubmed-57042392017-11-30 Taxonomic Classification for Living Organisms Using Convolutional Neural Networks Khawaldeh, Saed Pervaiz, Usama Elsharnoby, Mohammed Alchalabi, Alaa Eddin Al-Zubi, Nayel Genes (Basel) Article Taxonomic classification has a wide-range of applications such as finding out more about evolutionary history. Compared to the estimated number of organisms that nature harbors, humanity does not have a thorough comprehension of to which specific classes they belong. The classification of living organisms can be done in many machine learning techniques. However, in this study, this is performed using convolutional neural networks. Moreover, a DNA encoding technique is incorporated in the algorithm to increase performance and avoid misclassifications. The algorithm proposed outperformed the state of the art algorithms in terms of accuracy and sensitivity, which illustrates a high potential for using it in many other applications in genome analysis. MDPI 2017-11-17 /pmc/articles/PMC5704239/ /pubmed/29149087 http://dx.doi.org/10.3390/genes8110326 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Khawaldeh, Saed
Pervaiz, Usama
Elsharnoby, Mohammed
Alchalabi, Alaa Eddin
Al-Zubi, Nayel
Taxonomic Classification for Living Organisms Using Convolutional Neural Networks
title Taxonomic Classification for Living Organisms Using Convolutional Neural Networks
title_full Taxonomic Classification for Living Organisms Using Convolutional Neural Networks
title_fullStr Taxonomic Classification for Living Organisms Using Convolutional Neural Networks
title_full_unstemmed Taxonomic Classification for Living Organisms Using Convolutional Neural Networks
title_short Taxonomic Classification for Living Organisms Using Convolutional Neural Networks
title_sort taxonomic classification for living organisms using convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704239/
https://www.ncbi.nlm.nih.gov/pubmed/29149087
http://dx.doi.org/10.3390/genes8110326
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