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Taxonomic Classification for Living Organisms Using Convolutional Neural Networks
Taxonomic classification has a wide-range of applications such as finding out more about evolutionary history. Compared to the estimated number of organisms that nature harbors, humanity does not have a thorough comprehension of to which specific classes they belong. The classification of living org...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704239/ https://www.ncbi.nlm.nih.gov/pubmed/29149087 http://dx.doi.org/10.3390/genes8110326 |
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author | Khawaldeh, Saed Pervaiz, Usama Elsharnoby, Mohammed Alchalabi, Alaa Eddin Al-Zubi, Nayel |
author_facet | Khawaldeh, Saed Pervaiz, Usama Elsharnoby, Mohammed Alchalabi, Alaa Eddin Al-Zubi, Nayel |
author_sort | Khawaldeh, Saed |
collection | PubMed |
description | Taxonomic classification has a wide-range of applications such as finding out more about evolutionary history. Compared to the estimated number of organisms that nature harbors, humanity does not have a thorough comprehension of to which specific classes they belong. The classification of living organisms can be done in many machine learning techniques. However, in this study, this is performed using convolutional neural networks. Moreover, a DNA encoding technique is incorporated in the algorithm to increase performance and avoid misclassifications. The algorithm proposed outperformed the state of the art algorithms in terms of accuracy and sensitivity, which illustrates a high potential for using it in many other applications in genome analysis. |
format | Online Article Text |
id | pubmed-5704239 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-57042392017-11-30 Taxonomic Classification for Living Organisms Using Convolutional Neural Networks Khawaldeh, Saed Pervaiz, Usama Elsharnoby, Mohammed Alchalabi, Alaa Eddin Al-Zubi, Nayel Genes (Basel) Article Taxonomic classification has a wide-range of applications such as finding out more about evolutionary history. Compared to the estimated number of organisms that nature harbors, humanity does not have a thorough comprehension of to which specific classes they belong. The classification of living organisms can be done in many machine learning techniques. However, in this study, this is performed using convolutional neural networks. Moreover, a DNA encoding technique is incorporated in the algorithm to increase performance and avoid misclassifications. The algorithm proposed outperformed the state of the art algorithms in terms of accuracy and sensitivity, which illustrates a high potential for using it in many other applications in genome analysis. MDPI 2017-11-17 /pmc/articles/PMC5704239/ /pubmed/29149087 http://dx.doi.org/10.3390/genes8110326 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Khawaldeh, Saed Pervaiz, Usama Elsharnoby, Mohammed Alchalabi, Alaa Eddin Al-Zubi, Nayel Taxonomic Classification for Living Organisms Using Convolutional Neural Networks |
title | Taxonomic Classification for Living Organisms Using Convolutional Neural Networks |
title_full | Taxonomic Classification for Living Organisms Using Convolutional Neural Networks |
title_fullStr | Taxonomic Classification for Living Organisms Using Convolutional Neural Networks |
title_full_unstemmed | Taxonomic Classification for Living Organisms Using Convolutional Neural Networks |
title_short | Taxonomic Classification for Living Organisms Using Convolutional Neural Networks |
title_sort | taxonomic classification for living organisms using convolutional neural networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704239/ https://www.ncbi.nlm.nih.gov/pubmed/29149087 http://dx.doi.org/10.3390/genes8110326 |
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