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An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma

MicroRNA (miR)-19a, as an oncomiR, has been studied in several types of cancer; however, its role in the development and progression of multiple myeloma (MM) remains unclear. The present study used a bioinformatics approach to investigate the involvement of miR-19a in MM. miR-19a targets were predic...

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Autores principales: Lv, Hongyan, Wu, Xianda, Ma, Guiru, Sun, Lixia, Meng, Jianbo, Song, Xiaoning, Zhang, Jinqiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704339/
https://www.ncbi.nlm.nih.gov/pubmed/29201171
http://dx.doi.org/10.3892/etm.2017.5173
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author Lv, Hongyan
Wu, Xianda
Ma, Guiru
Sun, Lixia
Meng, Jianbo
Song, Xiaoning
Zhang, Jinqiao
author_facet Lv, Hongyan
Wu, Xianda
Ma, Guiru
Sun, Lixia
Meng, Jianbo
Song, Xiaoning
Zhang, Jinqiao
author_sort Lv, Hongyan
collection PubMed
description MicroRNA (miR)-19a, as an oncomiR, has been studied in several types of cancer; however, its role in the development and progression of multiple myeloma (MM) remains unclear. The present study used a bioinformatics approach to investigate the involvement of miR-19a in MM. miR-19a targets were predicted using target prediction programs, followed by screening for differentially expressed genes in MM. The function of these genes was then annotated using gene ontology term enrichment, signaling pathway enrichment and protein-protein interaction (PPI) analysis. In addition, natural language processing (NLP) was performed to identify genes associated with MM. A total of 715 putative targets of miR-19a were identified in the present study, of which 40 were experimentally validated. A total of 121 genes were identified to be differentially expressed in MM, including 80 upregulated genes and 41 downregulated genes. Among the differentially expressed genes, ras homolog family member B, clathrin heavy chain, prosaposin and protein phosphatase 6 regulatory subunit 2 were predicted target genes of miR-19a. The results of NLP revealed that 2 of the differentially expressed genes, Y-box binding protein 1 and TP53 regulated inhibitor of apoptosis 1, were reported to be associated with MM. In addition, 41 target genes of miR-19a were identified to be associated with the development and progression of MM. These results may aid in understanding the molecular mechanisms of miR-19a in the development and progression of MM. In addition, the results of the present study indicate that targets genes of miR-19a are potential candidate biomarkers for MM.
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spelling pubmed-57043392017-11-30 An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma Lv, Hongyan Wu, Xianda Ma, Guiru Sun, Lixia Meng, Jianbo Song, Xiaoning Zhang, Jinqiao Exp Ther Med Articles MicroRNA (miR)-19a, as an oncomiR, has been studied in several types of cancer; however, its role in the development and progression of multiple myeloma (MM) remains unclear. The present study used a bioinformatics approach to investigate the involvement of miR-19a in MM. miR-19a targets were predicted using target prediction programs, followed by screening for differentially expressed genes in MM. The function of these genes was then annotated using gene ontology term enrichment, signaling pathway enrichment and protein-protein interaction (PPI) analysis. In addition, natural language processing (NLP) was performed to identify genes associated with MM. A total of 715 putative targets of miR-19a were identified in the present study, of which 40 were experimentally validated. A total of 121 genes were identified to be differentially expressed in MM, including 80 upregulated genes and 41 downregulated genes. Among the differentially expressed genes, ras homolog family member B, clathrin heavy chain, prosaposin and protein phosphatase 6 regulatory subunit 2 were predicted target genes of miR-19a. The results of NLP revealed that 2 of the differentially expressed genes, Y-box binding protein 1 and TP53 regulated inhibitor of apoptosis 1, were reported to be associated with MM. In addition, 41 target genes of miR-19a were identified to be associated with the development and progression of MM. These results may aid in understanding the molecular mechanisms of miR-19a in the development and progression of MM. In addition, the results of the present study indicate that targets genes of miR-19a are potential candidate biomarkers for MM. D.A. Spandidos 2017-11 2017-09-21 /pmc/articles/PMC5704339/ /pubmed/29201171 http://dx.doi.org/10.3892/etm.2017.5173 Text en Copyright: © Lv et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Lv, Hongyan
Wu, Xianda
Ma, Guiru
Sun, Lixia
Meng, Jianbo
Song, Xiaoning
Zhang, Jinqiao
An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma
title An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma
title_full An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma
title_fullStr An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma
title_full_unstemmed An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma
title_short An integrated bioinformatical analysis of miR-19a target genes in multiple myeloma
title_sort integrated bioinformatical analysis of mir-19a target genes in multiple myeloma
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704339/
https://www.ncbi.nlm.nih.gov/pubmed/29201171
http://dx.doi.org/10.3892/etm.2017.5173
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