Cargando…

Phylogenomics of Cas4 family nucleases

BACKGROUND: The Cas4 family endonuclease is a component of the adaptation module in many variants of CRISPR-Cas adaptive immunity systems. Unlike most of the other Cas proteins, Cas4 is often encoded outside CRISPR-cas loci (solo-Cas4) and is also found in mobile genetic elements (MGE-Cas4). RESULTS...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hudaiberdiev, Sanjarbek, Shmakov, Sergey, Wolf, Yuri I., Terns, Michael P., Makarova, Kira S., Koonin, Eugene V.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704561/ https://www.ncbi.nlm.nih.gov/pubmed/29179671 http://dx.doi.org/10.1186/s12862-017-1081-1

Ejemplares similares

Diversity, evolution, and classification of the RNA-guided nucleases TnpB and Cas12
por: Altae-Tran, Han, et al.
Publicado: (2023)

Phylogenomics of prokaryotic ribosomal proteins
por: Yutin, Natalya, et al.
Publicado: (2011)

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
por: Makarova, Kira S, et al.
Publicado: (2011)

Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems
por: Faure, Guilhem, et al.
Publicado: (2018)

Recent Mobility of Casposons, Self-Synthesizing Transposons at the Origin of the CRISPR-Cas Immunity
por: Krupovic, Mart, et al.
Publicado: (2016)

Widespread CRISPR repeat-like RNA regulatory elements in CRISPR-Cas systems
por: Shmakov, Sergey A., et al.
Publicado: (2023)

The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes
por: Shmakov, Sergey A., et al.
Publicado: (2017)

Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis
por: Makarova, Kira S., et al.
Publicado: (2022)

Origins and evolution of CRISPR-Cas systems
por: Koonin, Eugene V., et al.
Publicado: (2019)

Machine-learning approach expands the repertoire of anti-CRISPR protein families
por: Gussow, Ayal B., et al.
Publicado: (2020)

CRISPR-Cas: an adaptive immunity system in prokaryotes
por: Koonin, Eugene V, et al.
Publicado: (2009)

Extreme Deviations from Expected Evolutionary Rates in Archaeal Protein Families
por: Petitjean, Celine, et al.
Publicado: (2017)

Phylogenomics of Prokaryotic Ribosomal Proteins
por: Yutin, Natalya, et al.
Publicado: (2012)

Mobile Genetic Elements and Evolution of CRISPR-Cas Systems: All the Way There and Back
por: Koonin, Eugene V., et al.
Publicado: (2017)

Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions
por: Karamycheva, Svetlana, et al.
Publicado: (2022)

Evolution of an archaeal virus nucleocapsid protein from the CRISPR-associated Cas4 nuclease
por: Krupovic, Mart, et al.
Publicado: (2015)

Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
por: Makarova, Kira S, et al.
Publicado: (2009)

Comparative genomics of defense systems in archaea and bacteria
por: Makarova, Kira S., et al.
Publicado: (2013)

Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales
por: Makarova, Kira S., et al.
Publicado: (2015)

Towards functional characterization of archaeal genomic dark matter
por: Makarova, Kira S., et al.
Publicado: (2019)

Classification and evolution of type II CRISPR-Cas systems
por: Chylinski, Krzysztof, et al.
Publicado: (2014)

Sequence characteristics and an accurate model of high-occupancy target loci in the human genome
por: Hudaiberdiev, Sanjarbek, et al.
Publicado: (2023)

ISC, a Novel Group of Bacterial and Archaeal DNA Transposons That Encode Cas9 Homologs
por: Kapitonov, Vladimir V., et al.
Publicado: (2016)

CRISPRidentify: identification of CRISPR arrays using machine learning approach
por: Mitrofanov, Alexander, et al.
Publicado: (2020)

The Deep Archaeal Roots of Eukaryotes
por: Yutin, Natalya, et al.
Publicado: (2008)

Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems
por: Galperin, Michael Y., et al.
Publicado: (2018)

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer
por: Wolf, Yuri I, et al.
Publicado: (2012)

A Unique Gene Module in Thermococcales Archaea Centered on a Hypervariable Protein Containing Immunoglobulin Domains
por: Makarova, Kira S., et al.
Publicado: (2021)

Two new families of the FtsZ-tubulin protein superfamily implicated in membrane remodeling in diverse bacteria and archaea
por: Makarova, Kira S, et al.
Publicado: (2010)

Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
por: Makarova, Kira S., et al.
Publicado: (2005)

ChromDL: A Next-Generation Regulatory DNA Classifier
por: Hill, Christopher, et al.
Publicado: (2023)

A highly conserved family of inactivated archaeal B family DNA polymerases
por: Rogozin, Igor B, et al.
Publicado: (2008)

Just how Lamarckian is CRISPR-Cas immunity: the continuum of evolvability mechanisms
por: Koonin, Eugene V., et al.
Publicado: (2016)

Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements
por: Makarova, Kira S, et al.
Publicado: (2009)

Compensatory relationship between low-complexity regions and gene paralogy in the evolution of prokaryotes
por: Persi, Erez, et al.
Publicado: (2023)

Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity
por: Krupovic, Mart, et al.
Publicado: (2014)

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
por: Makarova, Kira S, et al.
Publicado: (2007)

Evolutionary primacy of sodium bioenergetics
por: Mulkidjanian, Armen Y, et al.
Publicado: (2008)

Regulation of the RNA and DNA nuclease activities required for Pyrococcus furiosus Type III-B CRISPR–Cas immunity
por: Foster, Kawanda, et al.
Publicado: (2020)

Reconstruction of the evolution of microbial defense systems
por: Puigbò, Pere, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_5ul9d3sa2uveph51tdf7dm8t0j