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State of the art technologies to explore long non‐coding RNAs in cancer

Long non‐coding RNAs (lncRNAs) comprise a vast repertoire of RNAs playing a wide variety of crucial roles in tissue physiology in a cell‐specific manner. Despite being engaged in myriads of regulatory mechanisms, many lncRNAs have still remained to be assigned any functions. A constellation of exper...

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Detalles Bibliográficos
Autores principales: Salehi, Saeede, Taheri, Mohammad Naser, Azarpira, Negar, Zare, Abdolhossein, Behzad‐Behbahani, Abbas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5706582/
https://www.ncbi.nlm.nih.gov/pubmed/28631377
http://dx.doi.org/10.1111/jcmm.13238
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author Salehi, Saeede
Taheri, Mohammad Naser
Azarpira, Negar
Zare, Abdolhossein
Behzad‐Behbahani, Abbas
author_facet Salehi, Saeede
Taheri, Mohammad Naser
Azarpira, Negar
Zare, Abdolhossein
Behzad‐Behbahani, Abbas
author_sort Salehi, Saeede
collection PubMed
description Long non‐coding RNAs (lncRNAs) comprise a vast repertoire of RNAs playing a wide variety of crucial roles in tissue physiology in a cell‐specific manner. Despite being engaged in myriads of regulatory mechanisms, many lncRNAs have still remained to be assigned any functions. A constellation of experimental techniques including single‐molecule RNA in situ hybridization (sm‐RNA FISH), cross‐linking and immunoprecipitation (CLIP), RNA interference (RNAi), Clustered regularly interspaced short palindromic repeats (CRISPR) and so forth has been employed to shed light on lncRNA cellular localization, structure, interaction networks and functions. Here, we review these and other experimental approaches in common use for identification and characterization of lncRNAs, particularly those involved in different types of cancer, with focus on merits and demerits of each technique.
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spelling pubmed-57065822017-12-06 State of the art technologies to explore long non‐coding RNAs in cancer Salehi, Saeede Taheri, Mohammad Naser Azarpira, Negar Zare, Abdolhossein Behzad‐Behbahani, Abbas J Cell Mol Med Reviews Long non‐coding RNAs (lncRNAs) comprise a vast repertoire of RNAs playing a wide variety of crucial roles in tissue physiology in a cell‐specific manner. Despite being engaged in myriads of regulatory mechanisms, many lncRNAs have still remained to be assigned any functions. A constellation of experimental techniques including single‐molecule RNA in situ hybridization (sm‐RNA FISH), cross‐linking and immunoprecipitation (CLIP), RNA interference (RNAi), Clustered regularly interspaced short palindromic repeats (CRISPR) and so forth has been employed to shed light on lncRNA cellular localization, structure, interaction networks and functions. Here, we review these and other experimental approaches in common use for identification and characterization of lncRNAs, particularly those involved in different types of cancer, with focus on merits and demerits of each technique. John Wiley and Sons Inc. 2017-06-19 2017-12 /pmc/articles/PMC5706582/ /pubmed/28631377 http://dx.doi.org/10.1111/jcmm.13238 Text en © 2017 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Reviews
Salehi, Saeede
Taheri, Mohammad Naser
Azarpira, Negar
Zare, Abdolhossein
Behzad‐Behbahani, Abbas
State of the art technologies to explore long non‐coding RNAs in cancer
title State of the art technologies to explore long non‐coding RNAs in cancer
title_full State of the art technologies to explore long non‐coding RNAs in cancer
title_fullStr State of the art technologies to explore long non‐coding RNAs in cancer
title_full_unstemmed State of the art technologies to explore long non‐coding RNAs in cancer
title_short State of the art technologies to explore long non‐coding RNAs in cancer
title_sort state of the art technologies to explore long non‐coding rnas in cancer
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5706582/
https://www.ncbi.nlm.nih.gov/pubmed/28631377
http://dx.doi.org/10.1111/jcmm.13238
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