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Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation

Cellular differentiations are often regulated by bistable switches resulting from specific arrangements of multiple positive feedback loops (PFL) fused to one another. Although bistability generates digital responses at the cellular level, stochasticity in chemical reactions causes population hetero...

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Detalles Bibliográficos
Autores principales: Dey, Anupam, Barik, Debashis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5706692/
https://www.ncbi.nlm.nih.gov/pubmed/29186174
http://dx.doi.org/10.1371/journal.pone.0188623
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author Dey, Anupam
Barik, Debashis
author_facet Dey, Anupam
Barik, Debashis
author_sort Dey, Anupam
collection PubMed
description Cellular differentiations are often regulated by bistable switches resulting from specific arrangements of multiple positive feedback loops (PFL) fused to one another. Although bistability generates digital responses at the cellular level, stochasticity in chemical reactions causes population heterogeneity in terms of its differentiated states. We hypothesized that the specific arrangements of PFLs may have evolved to minimize the cellular heterogeneity in differentiation. In order to test this we investigated variability in cellular differentiation controlled either by parallel or serial arrangements of multiple PFLs having similar average properties under extrinsic and intrinsic noises. We find that motifs with PFLs fused in parallel to one another around a central regulator are less susceptible to noise as compared to the motifs with PFLs arranged serially. Our calculations suggest that the increased resistance to noise in parallel motifs originate from the less sensitivity of bifurcation points to the extrinsic noise. Whereas estimation of mean residence times indicate that stable branches of bifurcations are robust to intrinsic noise in parallel motifs as compared to serial motifs. Model conclusions are consistent both in AND- and OR-gate input signal configurations and also with two different modeling strategies. Our investigations provide some insight into recent findings that differentiation of preadipocyte to mature adipocyte is controlled by network of parallel PFLs.
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spelling pubmed-57066922017-12-08 Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation Dey, Anupam Barik, Debashis PLoS One Research Article Cellular differentiations are often regulated by bistable switches resulting from specific arrangements of multiple positive feedback loops (PFL) fused to one another. Although bistability generates digital responses at the cellular level, stochasticity in chemical reactions causes population heterogeneity in terms of its differentiated states. We hypothesized that the specific arrangements of PFLs may have evolved to minimize the cellular heterogeneity in differentiation. In order to test this we investigated variability in cellular differentiation controlled either by parallel or serial arrangements of multiple PFLs having similar average properties under extrinsic and intrinsic noises. We find that motifs with PFLs fused in parallel to one another around a central regulator are less susceptible to noise as compared to the motifs with PFLs arranged serially. Our calculations suggest that the increased resistance to noise in parallel motifs originate from the less sensitivity of bifurcation points to the extrinsic noise. Whereas estimation of mean residence times indicate that stable branches of bifurcations are robust to intrinsic noise in parallel motifs as compared to serial motifs. Model conclusions are consistent both in AND- and OR-gate input signal configurations and also with two different modeling strategies. Our investigations provide some insight into recent findings that differentiation of preadipocyte to mature adipocyte is controlled by network of parallel PFLs. Public Library of Science 2017-11-29 /pmc/articles/PMC5706692/ /pubmed/29186174 http://dx.doi.org/10.1371/journal.pone.0188623 Text en © 2017 Dey, Barik http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Dey, Anupam
Barik, Debashis
Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation
title Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation
title_full Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation
title_fullStr Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation
title_full_unstemmed Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation
title_short Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation
title_sort parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5706692/
https://www.ncbi.nlm.nih.gov/pubmed/29186174
http://dx.doi.org/10.1371/journal.pone.0188623
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