Cargando…

Inference of differentiation time for single cell transcriptomes using cell population reference data

Single-cell RNA sequencing (scRNA-seq) is a powerful method for dissecting intercellular heterogeneity during development. Conventional trajectory analysis provides only a pseudotime of development, and often discards cell-cycle events as confounding factors. Here using matched cell population RNA-s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sun, Na, Yu, Xiaoming, Li, Fang, Liu, Denghui, Suo, Shengbao, Chen, Weiyang, Chen, Shirui, Song, Lu, Green, Christopher D., McDermott, Joseph, Shen, Qin, Jing, Naihe, Han, Jing-Dong J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707349/ https://www.ncbi.nlm.nih.gov/pubmed/29187729 http://dx.doi.org/10.1038/s41467-017-01860-2

Ejemplares similares

Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos
por: Wang, Xinyi, et al.
Publicado: (2017)

Integration of Computational Analysis and Spatial Transcriptomics in Single-cell Studies
por: Wang, Ran, et al.
Publicado: (2023)

Molecular and phenotypic biomarkers of aging
por: Xia, Xian, et al.
Publicado: (2017)

The promise of stem cells in the therapy of Alzheimer’s disease
por: Yue, Chunmei, et al.
Publicado: (2015)

Genome-wide analysis of histone acetylation dynamics during mouse embryonic stem cell neural differentiation
por: Liu, Pingyu, et al.
Publicado: (2015)

Pluripotent Stem Cell Studies Elucidate the Underlying Mechanisms of Early Embryonic Development
por: Li, Lingyu, et al.
Publicado: (2011)

The therapeutic prospects and challenges of human neural stem cells for the treatment of Alzheimer's Disease
por: Yue, Chunmei, et al.
Publicado: (2022)

Genome-wide ChIP-seq and RNA-seq analyses of Pou3f1 during mouse pluripotent stem cell neural fate commitment
por: Song, Lu, et al.
Publicado: (2015)

Efficient inference of synaptic plasticity rule with Gaussian process regression
por: Chen, Shirui, et al.
Publicado: (2023)

Conserved Epigenetic Regulatory Logic Infers Genes Governing Cell Identity
por: Shim, Woo Jun, et al.
Publicado: (2020)

SWI/SNF complexes are required for retinal pigmented epithelium differentiation and for the inhibition of cell proliferation and neural differentiation programs
por: Ovadia, Shai, et al.
Publicado: (2023)

CellDART: cell type inference by domain adaptation of single-cell and spatial transcriptomic data
por: Bae, Sungwoo, et al.
Publicado: (2022)

Reference priors and model inference
por: Pierini, Maurizio
Publicado: (2011)

Model Inference with Reference Priors
por: Pierini, Maurizio, et al.
Publicado: (2011)

Revealing the Critical Regulators of Cell Identity in the Mouse Cell Atlas
por: Suo, Shengbao, et al.
Publicado: (2018)

T cell fate and clonality inference from single cell transcriptomes
por: Stubbington, Michael J.T., et al.
Publicado: (2016)

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
por: Street, Kelly, et al.
Publicado: (2018)

Interaction-based transcriptome analysis via differential network inference
por: Leng, Jiacheng, et al.
Publicado: (2022)

New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data
por: Shao, Xin, et al.
Publicado: (2020)

SUN-050 The Evolutionarily Conserved Function of COUP-TF Genes in the Differentiation of Photoreceptor Cells in the Retina
por: Zhu, Jian, et al.
Publicado: (2019)

Gain-of-function mutations in Trim71 linked to congenital hydrocephalus
por: Chen, Yingying, et al.
Publicado: (2023)

Suppressing Nodal Signaling Activity Predisposes Ectodermal Differentiation of Epiblast Stem Cells
por: Liu, Chang, et al.
Publicado: (2018)

Protocol for generating human induced neural progenitor cells from immobilized adult peripheral blood
por: Zhang, Ting, et al.
Publicado: (2021)

Improving network inference algorithms using resampling methods
por: Colby, Sean M, et al.
Publicado: (2018)

Single-cell-level spatial gene expression in the embryonic neural differentiation niche
por: Huang, Yi, et al.
Publicado: (2015)

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
por: Nip, Ka Ming, et al.
Publicado: (2020)

A Method for the Direct Identification of Differentiating Muscle Cells by a Fluorescent Mitochondrial Dye
por: Miyake, Tetsuaki, et al.
Publicado: (2011)

STGRNS: an interpretable transformer-based method for inferring gene regulatory networks from single-cell transcriptomic data
por: Xu, Jing, et al.
Publicado: (2023)

Deconvolution algorithms for inference of the cell-type composition of the spatial transcriptome
por: Zhang, Yingkun, et al.
Publicado: (2022)

Reference-free inference of tumor phylogenies from single-cell sequencing data
por: Subramanian, Ayshwarya, et al.
Publicado: (2015)

Inferring gene regulatory network from single-cell transcriptomes with graph autoencoder model
por: Wang, Jiacheng, et al.
Publicado: (2023)

Inferring transcriptomic cell states and transitions only from time series transcriptome data
por: Jo, Kyuri, et al.
Publicado: (2021)

Cell lineage and communication network inference via optimization for single-cell transcriptomics
por: Wang, Shuxiong, et al.
Publicado: (2019)

Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
por: Andersson, Alma, et al.
Publicado: (2020)

Cell segmentation-free inference of cell types from in situ transcriptomics data
por: Park, Jeongbin, et al.
Publicado: (2021)

SOX1 Is Required for the Specification of Rostral Hindbrain Neural Progenitor Cells from Human Embryonic Stem Cells
por: Liu, Xinyuan, et al.
Publicado: (2020)

Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states
por: Jang, Sumin, et al.
Publicado: (2017)

A reference single-cell regulomic and transcriptomic map of cynomolgus monkeys
por: Qu, Jiao, et al.
Publicado: (2022)

Nkx2.5 marks angioblasts that contribute to hemogenic endothelium of the endocardium and dorsal aorta
por: Zamir, Lyad, et al.
Publicado: (2017)

The differentiation and integration of the hippocampal dorsoventral axis are controlled by two nuclear receptor genes
por: Yang, Xiong, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_o7o7q660g3vf58b7ug78gph0ll