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Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm
Particle tracking, which is an essential tool in many fields of scientific research, uses algorithms that retrieve the centroid of tracked particles with sub-pixel accuracy. However, images in which the particles occupy a small number of pixels on the detector, are in close proximity to other partic...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707392/ https://www.ncbi.nlm.nih.gov/pubmed/29185459 http://dx.doi.org/10.1038/s41598-017-14166-6 |
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author | Yifat, Yuval Sule, Nishant Lin, Yihan Scherer, Norbert F. |
author_facet | Yifat, Yuval Sule, Nishant Lin, Yihan Scherer, Norbert F. |
author_sort | Yifat, Yuval |
collection | PubMed |
description | Particle tracking, which is an essential tool in many fields of scientific research, uses algorithms that retrieve the centroid of tracked particles with sub-pixel accuracy. However, images in which the particles occupy a small number of pixels on the detector, are in close proximity to other particles or suffer from background noise, show a systematic error in which the particle sub-pixel positions are biased towards the center of the pixel. This “pixel locking” effect greatly reduces particle tracking accuracy. In this report, we demonstrate the severity of these errors by tracking experimental (and simulated) imaging data of optically trapped silver nanoparticles and single fluorescent proteins. We show that errors in interparticle separation, angle and mean square displacement are significantly reduced by applying the corrective Single-Pixel Interior Filling Function (SPIFF) algorithm. Our work demonstrates the potential ubiquity of such errors and the general applicability of SPIFF correction to many experimental fields. |
format | Online Article Text |
id | pubmed-5707392 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57073922017-12-06 Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm Yifat, Yuval Sule, Nishant Lin, Yihan Scherer, Norbert F. Sci Rep Article Particle tracking, which is an essential tool in many fields of scientific research, uses algorithms that retrieve the centroid of tracked particles with sub-pixel accuracy. However, images in which the particles occupy a small number of pixels on the detector, are in close proximity to other particles or suffer from background noise, show a systematic error in which the particle sub-pixel positions are biased towards the center of the pixel. This “pixel locking” effect greatly reduces particle tracking accuracy. In this report, we demonstrate the severity of these errors by tracking experimental (and simulated) imaging data of optically trapped silver nanoparticles and single fluorescent proteins. We show that errors in interparticle separation, angle and mean square displacement are significantly reduced by applying the corrective Single-Pixel Interior Filling Function (SPIFF) algorithm. Our work demonstrates the potential ubiquity of such errors and the general applicability of SPIFF correction to many experimental fields. Nature Publishing Group UK 2017-11-29 /pmc/articles/PMC5707392/ /pubmed/29185459 http://dx.doi.org/10.1038/s41598-017-14166-6 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Yifat, Yuval Sule, Nishant Lin, Yihan Scherer, Norbert F. Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm |
title | Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm |
title_full | Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm |
title_fullStr | Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm |
title_full_unstemmed | Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm |
title_short | Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm |
title_sort | analysis and correction of errors in nanoscale particle tracking using the single-pixel interior filling function (spiff) algorithm |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707392/ https://www.ncbi.nlm.nih.gov/pubmed/29185459 http://dx.doi.org/10.1038/s41598-017-14166-6 |
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