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Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure

Glycoside hydrolase (GH) family 48 is an understudied and increasingly important exoglucanase family found in the majority of bacterial cellulase systems. Moreover, many thermophilic enzyme systems contain GH48 enzymes. Deletion of GH48 enzymes in these microorganisms results in drastic reduction in...

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Autores principales: Brunecky, Roman, Alahuhta, Markus, Sammond, Deanne W., Xu, Qi, Chen, Mo, Wilson, David B., Brady, John W., Himmel, Michael E., Bomble, Yannick J., Lunin, Vladimir V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707792/
https://www.ncbi.nlm.nih.gov/pubmed/29213319
http://dx.doi.org/10.1186/s13068-017-0951-5
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author Brunecky, Roman
Alahuhta, Markus
Sammond, Deanne W.
Xu, Qi
Chen, Mo
Wilson, David B.
Brady, John W.
Himmel, Michael E.
Bomble, Yannick J.
Lunin, Vladimir V.
author_facet Brunecky, Roman
Alahuhta, Markus
Sammond, Deanne W.
Xu, Qi
Chen, Mo
Wilson, David B.
Brady, John W.
Himmel, Michael E.
Bomble, Yannick J.
Lunin, Vladimir V.
author_sort Brunecky, Roman
collection PubMed
description Glycoside hydrolase (GH) family 48 is an understudied and increasingly important exoglucanase family found in the majority of bacterial cellulase systems. Moreover, many thermophilic enzyme systems contain GH48 enzymes. Deletion of GH48 enzymes in these microorganisms results in drastic reduction in biomass deconstruction. Surprisingly, given their importance for these microorganisms, GH48s have intrinsically low cellulolytic activity but even in low ratios synergize greatly with GH9 endoglucanases. In this study, we explore the structural and enzymatic diversity of these enzymes across a wide range of temperature optima. We have crystallized one new GH48 module from Bacillus pumilus in a complex with cellobiose and cellohexaose (BpumGH48). We compare this structure to other known GH48 enzymes in an attempt to understand GH48 structure/function relationships and draw general rules correlating amino acid sequences and secondary structures to thermostability in this GH family. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13068-017-0951-5) contains supplementary material, which is available to authorized users.
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spelling pubmed-57077922017-12-06 Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure Brunecky, Roman Alahuhta, Markus Sammond, Deanne W. Xu, Qi Chen, Mo Wilson, David B. Brady, John W. Himmel, Michael E. Bomble, Yannick J. Lunin, Vladimir V. Biotechnol Biofuels Research Glycoside hydrolase (GH) family 48 is an understudied and increasingly important exoglucanase family found in the majority of bacterial cellulase systems. Moreover, many thermophilic enzyme systems contain GH48 enzymes. Deletion of GH48 enzymes in these microorganisms results in drastic reduction in biomass deconstruction. Surprisingly, given their importance for these microorganisms, GH48s have intrinsically low cellulolytic activity but even in low ratios synergize greatly with GH9 endoglucanases. In this study, we explore the structural and enzymatic diversity of these enzymes across a wide range of temperature optima. We have crystallized one new GH48 module from Bacillus pumilus in a complex with cellobiose and cellohexaose (BpumGH48). We compare this structure to other known GH48 enzymes in an attempt to understand GH48 structure/function relationships and draw general rules correlating amino acid sequences and secondary structures to thermostability in this GH family. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13068-017-0951-5) contains supplementary material, which is available to authorized users. BioMed Central 2017-11-30 /pmc/articles/PMC5707792/ /pubmed/29213319 http://dx.doi.org/10.1186/s13068-017-0951-5 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Brunecky, Roman
Alahuhta, Markus
Sammond, Deanne W.
Xu, Qi
Chen, Mo
Wilson, David B.
Brady, John W.
Himmel, Michael E.
Bomble, Yannick J.
Lunin, Vladimir V.
Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure
title Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure
title_full Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure
title_fullStr Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure
title_full_unstemmed Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure
title_short Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure
title_sort natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707792/
https://www.ncbi.nlm.nih.gov/pubmed/29213319
http://dx.doi.org/10.1186/s13068-017-0951-5
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