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Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae)

Hormones play an important role in the regulation of physiological, developmental and behavioural processes. Many of these mechanisms in insects, however, are still not well understood. One way to investigate hormonal regulation is to analyse gene expression patterns of hormones and their receptors...

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Autores principales: Nagy, Nikoletta A., Németh, Zoltán, Juhász, Edit, Póliska, Szilárd, Rácz, Rita, Kosztolányi, András, Barta, Zoltán
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5710163/
https://www.ncbi.nlm.nih.gov/pubmed/29201562
http://dx.doi.org/10.7717/peerj.4047
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author Nagy, Nikoletta A.
Németh, Zoltán
Juhász, Edit
Póliska, Szilárd
Rácz, Rita
Kosztolányi, András
Barta, Zoltán
author_facet Nagy, Nikoletta A.
Németh, Zoltán
Juhász, Edit
Póliska, Szilárd
Rácz, Rita
Kosztolányi, András
Barta, Zoltán
author_sort Nagy, Nikoletta A.
collection PubMed
description Hormones play an important role in the regulation of physiological, developmental and behavioural processes. Many of these mechanisms in insects, however, are still not well understood. One way to investigate hormonal regulation is to analyse gene expression patterns of hormones and their receptors by real-time quantitative polymerase chain reaction (RT-qPCR). This method, however, requires stably expressed reference genes for normalisation. In the present study, we evaluated 11 candidate housekeeping genes as reference genes in samples of Lethrus apterus, an earth-boring beetle with biparental care, collected from a natural population. For identifying the most stable genes we used the following computational methods: geNorm, NormFinder, BestKeeper, comparative delta Ct method and RefFinder. Based on our results, the two body regions sampled (head and thorax) differ in which genes are most stably expressed. We identified two candidate reference genes for each region investigated: ribosomal protein L7A and RP18 in samples extracted from the head, and ribosomal protein L7A and RP4 extracted from the muscles of the thorax. Additionally, L7A and RP18 appear to be the best reference genes for normalisation in all samples irrespective of body region. These reference genes can be used to study the hormonal regulation of reproduction and parental care in Lethrus apterus in the future.
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spelling pubmed-57101632017-12-03 Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae) Nagy, Nikoletta A. Németh, Zoltán Juhász, Edit Póliska, Szilárd Rácz, Rita Kosztolányi, András Barta, Zoltán PeerJ Entomology Hormones play an important role in the regulation of physiological, developmental and behavioural processes. Many of these mechanisms in insects, however, are still not well understood. One way to investigate hormonal regulation is to analyse gene expression patterns of hormones and their receptors by real-time quantitative polymerase chain reaction (RT-qPCR). This method, however, requires stably expressed reference genes for normalisation. In the present study, we evaluated 11 candidate housekeeping genes as reference genes in samples of Lethrus apterus, an earth-boring beetle with biparental care, collected from a natural population. For identifying the most stable genes we used the following computational methods: geNorm, NormFinder, BestKeeper, comparative delta Ct method and RefFinder. Based on our results, the two body regions sampled (head and thorax) differ in which genes are most stably expressed. We identified two candidate reference genes for each region investigated: ribosomal protein L7A and RP18 in samples extracted from the head, and ribosomal protein L7A and RP4 extracted from the muscles of the thorax. Additionally, L7A and RP18 appear to be the best reference genes for normalisation in all samples irrespective of body region. These reference genes can be used to study the hormonal regulation of reproduction and parental care in Lethrus apterus in the future. PeerJ Inc. 2017-11-28 /pmc/articles/PMC5710163/ /pubmed/29201562 http://dx.doi.org/10.7717/peerj.4047 Text en ©2017 Nagy et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Entomology
Nagy, Nikoletta A.
Németh, Zoltán
Juhász, Edit
Póliska, Szilárd
Rácz, Rita
Kosztolányi, András
Barta, Zoltán
Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae)
title Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae)
title_full Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae)
title_fullStr Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae)
title_full_unstemmed Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae)
title_short Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae)
title_sort evaluation of potential reference genes for real-time qpcr analysis in a biparental beetle, lethrus apterus (coleoptera: geotrupidae)
topic Entomology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5710163/
https://www.ncbi.nlm.nih.gov/pubmed/29201562
http://dx.doi.org/10.7717/peerj.4047
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