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Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use

Long-term contrasts in agricultural management can shift soil resource availability with potential consequences to microbial carbon (C) use efficiency (CUE) and the fate of C in soils. Isothermal calorimetry was combined with (13)C-labeled glucose stable isotope probing (SIP) of 16S rRNA genes to te...

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Autores principales: Arcand, Melissa M., Levy-Booth, David J., Helgason, Bobbi L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5711833/
https://www.ncbi.nlm.nih.gov/pubmed/29230199
http://dx.doi.org/10.3389/fmicb.2017.02293
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author Arcand, Melissa M.
Levy-Booth, David J.
Helgason, Bobbi L.
author_facet Arcand, Melissa M.
Levy-Booth, David J.
Helgason, Bobbi L.
author_sort Arcand, Melissa M.
collection PubMed
description Long-term contrasts in agricultural management can shift soil resource availability with potential consequences to microbial carbon (C) use efficiency (CUE) and the fate of C in soils. Isothermal calorimetry was combined with (13)C-labeled glucose stable isotope probing (SIP) of 16S rRNA genes to test the hypothesis that organically managed soils would support microbial communities with greater thermodynamic efficiency compared to conventional soils due to a legacy of lower resource availability and a resultant shift toward communities supportive of more oligotrophic taxa. Resource availability was greater in conventionally managed soils, with 3.5 times higher available phosphorus, 5% more nitrate, and 36% more dissolved organic C. The two management systems harbored distinct glucose-utilizing populations of Proteobacteria and Actinobacteria, with a higher Proteobacteria:Actinobacteria ratio (2.4 vs. 0.7) in conventional soils. Organically managed soils also harbored notable activity of Firmicutes. Thermodynamic efficiency indices were similar between soils, indicating that glucose was metabolized at similar energetic cost. However, differentially abundant glucose utilizers in organically managed soils were positively correlated with soil organic matter (SOM) priming and negatively correlated to soil nutrient and carbon availability, respiration, and heat production. These correlation patterns were strongly reversed in the conventionally managed soils indicating clear differentiation of microbial functioning related to soil resource availability. Fresh C addition caused proportionally more priming of SOM decomposition (57 vs. 51%) in organically managed soils likely due to mineralization of organic nutrients to satisfy microbial demands during glucose utilization in these more resource deprived soils. The additional heat released from SOM oxidation may explain the similar community level thermodynamic efficiencies between management systems. Restoring fertility to soils with a legacy of nutrient limitation requires a balanced supply of both nutrients and energy to protect stable SOM from microbial degradation. These results highlight the need to consider managing C for the energy it provides to ıcritical biological processes that underpin soil health.
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spelling pubmed-57118332017-12-11 Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use Arcand, Melissa M. Levy-Booth, David J. Helgason, Bobbi L. Front Microbiol Microbiology Long-term contrasts in agricultural management can shift soil resource availability with potential consequences to microbial carbon (C) use efficiency (CUE) and the fate of C in soils. Isothermal calorimetry was combined with (13)C-labeled glucose stable isotope probing (SIP) of 16S rRNA genes to test the hypothesis that organically managed soils would support microbial communities with greater thermodynamic efficiency compared to conventional soils due to a legacy of lower resource availability and a resultant shift toward communities supportive of more oligotrophic taxa. Resource availability was greater in conventionally managed soils, with 3.5 times higher available phosphorus, 5% more nitrate, and 36% more dissolved organic C. The two management systems harbored distinct glucose-utilizing populations of Proteobacteria and Actinobacteria, with a higher Proteobacteria:Actinobacteria ratio (2.4 vs. 0.7) in conventional soils. Organically managed soils also harbored notable activity of Firmicutes. Thermodynamic efficiency indices were similar between soils, indicating that glucose was metabolized at similar energetic cost. However, differentially abundant glucose utilizers in organically managed soils were positively correlated with soil organic matter (SOM) priming and negatively correlated to soil nutrient and carbon availability, respiration, and heat production. These correlation patterns were strongly reversed in the conventionally managed soils indicating clear differentiation of microbial functioning related to soil resource availability. Fresh C addition caused proportionally more priming of SOM decomposition (57 vs. 51%) in organically managed soils likely due to mineralization of organic nutrients to satisfy microbial demands during glucose utilization in these more resource deprived soils. The additional heat released from SOM oxidation may explain the similar community level thermodynamic efficiencies between management systems. Restoring fertility to soils with a legacy of nutrient limitation requires a balanced supply of both nutrients and energy to protect stable SOM from microbial degradation. These results highlight the need to consider managing C for the energy it provides to ıcritical biological processes that underpin soil health. Frontiers Media S.A. 2017-11-27 /pmc/articles/PMC5711833/ /pubmed/29230199 http://dx.doi.org/10.3389/fmicb.2017.02293 Text en Copyright © 2017 Her Majesty the Queen in Right of Canada, as represented by the Agriculture and Agri-Food Canada. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Arcand, Melissa M.
Levy-Booth, David J.
Helgason, Bobbi L.
Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
title Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
title_full Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
title_fullStr Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
title_full_unstemmed Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
title_short Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
title_sort resource legacies of organic and conventional management differentiate soil microbial carbon use
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5711833/
https://www.ncbi.nlm.nih.gov/pubmed/29230199
http://dx.doi.org/10.3389/fmicb.2017.02293
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