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Genotyping-by-sequencing data of 272 crested wheatgrass (Agropyron cristatum) genotypes

Crested wheatgrass [Agropyron cristatum L. (Gaertn.)] is an important cool-season forage grass widely used for early spring grazing. However, the genomic resources for this non-model plant are still lacking. Our goal was to generate the first set of next generation sequencing data using the genotypi...

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Autores principales: Li, Pingchuan, Biligetu, Bill, Coulman, Bruce E., Schellenberg, Michael, Fu, Yong-Bi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712052/
https://www.ncbi.nlm.nih.gov/pubmed/29214201
http://dx.doi.org/10.1016/j.dib.2017.09.030
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author Li, Pingchuan
Biligetu, Bill
Coulman, Bruce E.
Schellenberg, Michael
Fu, Yong-Bi
author_facet Li, Pingchuan
Biligetu, Bill
Coulman, Bruce E.
Schellenberg, Michael
Fu, Yong-Bi
author_sort Li, Pingchuan
collection PubMed
description Crested wheatgrass [Agropyron cristatum L. (Gaertn.)] is an important cool-season forage grass widely used for early spring grazing. However, the genomic resources for this non-model plant are still lacking. Our goal was to generate the first set of next generation sequencing data using the genotyping-by-sequencing technique. A total of 272 crested wheatgrass plants representing seven breeding lines, five cultivars and five geographically diverse accessions were sequenced with an Illumina MiSeq instrument. These sequence datasets were processed using different bioinformatics tools to generate contigs for diploid and tetraploid plants and SNPs for diploid plants. Together, these genomic resources form a fundamental basis for genomic studies of crested wheatgrass and other wheatgrass species. The raw reads were deposited into Sequence Read Archive (SRA) database under NCBI accession SRP115373 (https://www.ncbi.nlm.nih.gov/sra?term=SRP115373) and the supplementary datasets are accessible in Figshare (10.6084/m9.figshare.5345092).
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spelling pubmed-57120522017-12-06 Genotyping-by-sequencing data of 272 crested wheatgrass (Agropyron cristatum) genotypes Li, Pingchuan Biligetu, Bill Coulman, Bruce E. Schellenberg, Michael Fu, Yong-Bi Data Brief Genetics, Genomics and Molecular Biology Crested wheatgrass [Agropyron cristatum L. (Gaertn.)] is an important cool-season forage grass widely used for early spring grazing. However, the genomic resources for this non-model plant are still lacking. Our goal was to generate the first set of next generation sequencing data using the genotyping-by-sequencing technique. A total of 272 crested wheatgrass plants representing seven breeding lines, five cultivars and five geographically diverse accessions were sequenced with an Illumina MiSeq instrument. These sequence datasets were processed using different bioinformatics tools to generate contigs for diploid and tetraploid plants and SNPs for diploid plants. Together, these genomic resources form a fundamental basis for genomic studies of crested wheatgrass and other wheatgrass species. The raw reads were deposited into Sequence Read Archive (SRA) database under NCBI accession SRP115373 (https://www.ncbi.nlm.nih.gov/sra?term=SRP115373) and the supplementary datasets are accessible in Figshare (10.6084/m9.figshare.5345092). Elsevier 2017-09-22 /pmc/articles/PMC5712052/ /pubmed/29214201 http://dx.doi.org/10.1016/j.dib.2017.09.030 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology
Li, Pingchuan
Biligetu, Bill
Coulman, Bruce E.
Schellenberg, Michael
Fu, Yong-Bi
Genotyping-by-sequencing data of 272 crested wheatgrass (Agropyron cristatum) genotypes
title Genotyping-by-sequencing data of 272 crested wheatgrass (Agropyron cristatum) genotypes
title_full Genotyping-by-sequencing data of 272 crested wheatgrass (Agropyron cristatum) genotypes
title_fullStr Genotyping-by-sequencing data of 272 crested wheatgrass (Agropyron cristatum) genotypes
title_full_unstemmed Genotyping-by-sequencing data of 272 crested wheatgrass (Agropyron cristatum) genotypes
title_short Genotyping-by-sequencing data of 272 crested wheatgrass (Agropyron cristatum) genotypes
title_sort genotyping-by-sequencing data of 272 crested wheatgrass (agropyron cristatum) genotypes
topic Genetics, Genomics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712052/
https://www.ncbi.nlm.nih.gov/pubmed/29214201
http://dx.doi.org/10.1016/j.dib.2017.09.030
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