Cargando…

Kullback Leibler divergence in complete bacterial and phage genomes

The amino acid content of the proteins encoded by a genome may predict the coding potential of that genome and may reflect lifestyle restrictions of the organism. Here, we calculated the Kullback–Leibler divergence from the mean amino acid content as a metric to compare the amino acid composition fo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Akhter, Sajia, Aziz, Ramy K., Kashef, Mona T., Ibrahim, Eslam S., Bailey, Barbara, Edwards, Robert A.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2017
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712468/ https://www.ncbi.nlm.nih.gov/pubmed/29204318 http://dx.doi.org/10.7717/peerj.4026

Ejemplares similares

Kullback–Leibler divergence and the Pareto–Exponential approximation
por: Weinberg, G. V.
Publicado: (2016)

Computation of Kullback–Leibler Divergence in Bayesian Networks
por: Moral, Serafín, et al.
Publicado: (2021)

Kullback–Leibler Divergence of a Freely Cooling Granular Gas
por: Megías, Alberto, et al.
Publicado: (2020)

A data assimilation framework that uses the Kullback-Leibler divergence
por: Pimentel, Sam, et al.
Publicado: (2021)

Some Order Preserving Inequalities for Cross Entropy and Kullback–Leibler Divergence
por: Sbert, Mateu, et al.
Publicado: (2018)

Minimising the Kullback–Leibler Divergence for Model Selection in Distributed Nonlinear Systems
por: Cliff, Oliver M., et al.
Publicado: (2018)

Method for analyzing spike patterns with Markov transition matrices and Kullback-Leibler divergence
por: Sabottke, Carl F
Publicado: (2013)

Identifying critical state of complex diseases by single-sample Kullback–Leibler divergence
por: Zhong, Jiayuan, et al.
Publicado: (2020)

Complex temporal topic evolution modelling using the Kullback-Leibler divergence and the Bhattacharyya distance
por: Andrei, Victor, et al.
Publicado: (2016)

Nonlocal total variation based on symmetric Kullback-Leibler divergence for the ultrasound image despeckling
por: Liang, Shujun, et al.
Publicado: (2017)

Measuring Synchronization between Spikes and Local Field Potential Based on the Kullback–Leibler Divergence
por: Yin, Liyong, et al.
Publicado: (2021)

A Satellite Incipient Fault Detection Method Based on Decomposed Kullback–Leibler Divergence
por: Zhang, Ge, et al.
Publicado: (2021)

Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade
por: Tsuruyama, Tatsuaki
Publicado: (2023)

Kullback–Leibler Divergence of Sleep-Wake Patterns Related with Depressive Severity in Patients with Epilepsy
por: Liu, Mingsu, et al.
Publicado: (2023)

Applying Shannon's information theory to bacterial and phage genomes and metagenomes
por: Akhter, Sajia, et al.
Publicado: (2013)

Correction : Random-forest model for drug–target interaction prediction via Kullback–Leibler divergence
por: Ahn, Sangjin, et al.
Publicado: (2022)

Kullback-Leibler Divergence-Based Differential Evolution Markov Chain Filter for Global Localization of Mobile Robots
por: Martín, Fernando, et al.
Publicado: (2015)

Kullback–Leibler Divergence Based Probabilistic Approach for Device-Free Localization Using Channel State Information
por: Gao, Ruofei, et al.
Publicado: (2019)

Kullback–Leibler Divergence Based Distributed Cubature Kalman Filter and Its Application in Cooperative Space Object Tracking
por: Hu, Chen, et al.
Publicado: (2018)

Fault-Tolerant indoor localization based on speed conscious recurrent neural network using Kullback–Leibler divergence
por: Varma, Pothuri Surendra, et al.
Publicado: (2022)

A Generic Formula and Some Special Cases for the Kullback–Leibler Divergence between Central Multivariate Cauchy Distributions
por: Bouhlel, Nizar, et al.
Publicado: (2022)

Symmetric Kullback-Leibler Metric Based Tracking Behaviors for Bioinspired Robotic Eyes
por: Liu, Hengli, et al.
Publicado: (2015)

Probabilistic Pairwise Model Comparisons Based on Bootstrap Estimators of the Kullback–Leibler Discrepancy
por: Dajles, Andres, et al.
Publicado: (2022)

The fuzzy Kullback–Leibler divergence for estimating parameters of the probability distribution in fuzzy data: an application to classifying Vietnamese Herb Leaves
por: Le, Hoa, et al.
Publicado: (2023)

Generalized Grey Target Decision Method for Mixed Attributes Based on Kullback-Leibler Distance
por: Ma, Jinshan
Publicado: (2018)

Analysis of Cell Signal Transduction Based on Kullback–Leibler Divergence: Channel Capacity and Conservation of Its Production Rate during Cascade
por: Tsuruyama, Tatsuaki
Publicado: (2018)

Identifying rare variants for quantitative traits in extreme samples of population via Kullback-Leibler distance
por: Xiang, Yang, et al.
Publicado: (2020)

A Deep-Learning-Based Health Indicator Constructor Using Kullback–Leibler Divergence for Predicting the Remaining Useful Life of Concrete Structures
por: Nguyen, Tuan-Khai, et al.
Publicado: (2022)

Using Feature Engineering and Principal Component Analysis for Monitoring Spindle Speed Change Based on Kullback–Leibler Divergence with a Gaussian Mixture Model
por: Huang, Yi-Cheng, et al.
Publicado: (2023)

Individual brain metabolic connectome indicator based on Kullback-Leibler Divergence Similarity Estimation predicts progression from mild cognitive impairment to Alzheimer’s dementia
por: Wang, Min, et al.
Publicado: (2020)

Cardiac magnetic field map topology quantified by Kullback–Leibler entropy identifies patients with clinically suspected myocarditis
por: Pille, M., et al.
Publicado: (2023)

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
por: Akhter, Sajia, et al.
Publicado: (2012)

Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes
por: Aziz, Ramy K., et al.
Publicado: (2015)

A Sequence-Based Damage Identification Method for Composite Rotors by Applying the Kullback–Leibler Divergence, a Two-Sample Kolmogorov–Smirnov Test and a Statistical Hidden Markov Model
por: Filippatos, Angelos, et al.
Publicado: (2019)

Construction of an individualized brain metabolic network in patients with advanced non-small cell lung cancer by the Kullback-Leibler divergence-based similarity method: A study based on 18F-fluorodeoxyglucose positron emission tomography
por: Yu, Jie, et al.
Publicado: (2023)

A Kullback-Liebler divergence-based representation algorithm for malware detection
por: Aboaoja, Faitouri A., et al.
Publicado: (2023)

The Duality of Entropy/Extropy, and Completion of the Kullback Information Complex
por: Lad, Frank, et al.
Publicado: (2018)

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum
por: Anantharaman, Karthik, et al.
Publicado: (2016)

Random-forest model for drug–target interaction prediction via Kullbeck–Leibler divergence
por: Ahn, Sangjin, et al.
Publicado: (2022)

Divergent and convergent evolution of housekeeping genes in human–pig lineage
por: Wei, Kai, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_5sn9hkao3qpunia451588ap9lj