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Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images
Determining the grade of colon cancer from tissue slides is a routine part of the pathological analysis. In the case of colorectal adenocarcinoma (CRA), grading is partly determined by morphology and degree of formation of glandular structures. Achieving consistency between pathologists is difficult...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715083/ https://www.ncbi.nlm.nih.gov/pubmed/29203775 http://dx.doi.org/10.1038/s41598-017-16516-w |
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author | Awan, Ruqayya Sirinukunwattana, Korsuk Epstein, David Jefferyes, Samuel Qidwai, Uvais Aftab, Zia Mujeeb, Imaad Snead, David Rajpoot, Nasir |
author_facet | Awan, Ruqayya Sirinukunwattana, Korsuk Epstein, David Jefferyes, Samuel Qidwai, Uvais Aftab, Zia Mujeeb, Imaad Snead, David Rajpoot, Nasir |
author_sort | Awan, Ruqayya |
collection | PubMed |
description | Determining the grade of colon cancer from tissue slides is a routine part of the pathological analysis. In the case of colorectal adenocarcinoma (CRA), grading is partly determined by morphology and degree of formation of glandular structures. Achieving consistency between pathologists is difficult due to the subjective nature of grading assessment. An objective grading using computer algorithms will be more consistent, and will be able to analyse images in more detail. In this paper, we measure the shape of glands with a novel metric that we call the Best Alignment Metric (BAM). We show a strong correlation between a novel measure of glandular shape and grade of the tumour. We used shape specific parameters to perform a two-class classification of images into normal or cancerous tissue and a three-class classification into normal, low grade cancer, and high grade cancer. The task of detecting gland boundaries, which is a prerequisite of shape-based analysis, was carried out using a deep convolutional neural network designed for segmentation of glandular structures. A support vector machine (SVM) classifier was trained using shape features derived from BAM. Through cross-validation, we achieved an accuracy of 97% for the two-class and 91% for three-class classification. |
format | Online Article Text |
id | pubmed-5715083 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57150832017-12-08 Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images Awan, Ruqayya Sirinukunwattana, Korsuk Epstein, David Jefferyes, Samuel Qidwai, Uvais Aftab, Zia Mujeeb, Imaad Snead, David Rajpoot, Nasir Sci Rep Article Determining the grade of colon cancer from tissue slides is a routine part of the pathological analysis. In the case of colorectal adenocarcinoma (CRA), grading is partly determined by morphology and degree of formation of glandular structures. Achieving consistency between pathologists is difficult due to the subjective nature of grading assessment. An objective grading using computer algorithms will be more consistent, and will be able to analyse images in more detail. In this paper, we measure the shape of glands with a novel metric that we call the Best Alignment Metric (BAM). We show a strong correlation between a novel measure of glandular shape and grade of the tumour. We used shape specific parameters to perform a two-class classification of images into normal or cancerous tissue and a three-class classification into normal, low grade cancer, and high grade cancer. The task of detecting gland boundaries, which is a prerequisite of shape-based analysis, was carried out using a deep convolutional neural network designed for segmentation of glandular structures. A support vector machine (SVM) classifier was trained using shape features derived from BAM. Through cross-validation, we achieved an accuracy of 97% for the two-class and 91% for three-class classification. Nature Publishing Group UK 2017-12-04 /pmc/articles/PMC5715083/ /pubmed/29203775 http://dx.doi.org/10.1038/s41598-017-16516-w Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Awan, Ruqayya Sirinukunwattana, Korsuk Epstein, David Jefferyes, Samuel Qidwai, Uvais Aftab, Zia Mujeeb, Imaad Snead, David Rajpoot, Nasir Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images |
title | Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images |
title_full | Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images |
title_fullStr | Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images |
title_full_unstemmed | Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images |
title_short | Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images |
title_sort | glandular morphometrics for objective grading of colorectal adenocarcinoma histology images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715083/ https://www.ncbi.nlm.nih.gov/pubmed/29203775 http://dx.doi.org/10.1038/s41598-017-16516-w |
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