QuPath: Open source software for digital pathology image analysis

QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools,...

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Autores principales: Bankhead, Peter, Loughrey, Maurice B., Fernández, José A., Dombrowski, Yvonne, McArt, Darragh G., Dunne, Philip D., McQuaid, Stephen, Gray, Ronan T., Murray, Liam J., Coleman, Helen G., James, Jacqueline A., Salto-Tellez, Manuel, Hamilton, Peter W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715110/
https://www.ncbi.nlm.nih.gov/pubmed/29203879
http://dx.doi.org/10.1038/s41598-017-17204-5
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author Bankhead, Peter
Loughrey, Maurice B.
Fernández, José A.
Dombrowski, Yvonne
McArt, Darragh G.
Dunne, Philip D.
McQuaid, Stephen
Gray, Ronan T.
Murray, Liam J.
Coleman, Helen G.
James, Jacqueline A.
Salto-Tellez, Manuel
Hamilton, Peter W.
author_facet Bankhead, Peter
Loughrey, Maurice B.
Fernández, José A.
Dombrowski, Yvonne
McArt, Darragh G.
Dunne, Philip D.
McQuaid, Stephen
Gray, Ronan T.
Murray, Liam J.
Coleman, Helen G.
James, Jacqueline A.
Salto-Tellez, Manuel
Hamilton, Peter W.
author_sort Bankhead, Peter
collection PubMed
description QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath’s flexible design makes it suitable for a wide range of additional image analysis applications across biomedical research.
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spelling pubmed-57151102017-12-08 QuPath: Open source software for digital pathology image analysis Bankhead, Peter Loughrey, Maurice B. Fernández, José A. Dombrowski, Yvonne McArt, Darragh G. Dunne, Philip D. McQuaid, Stephen Gray, Ronan T. Murray, Liam J. Coleman, Helen G. James, Jacqueline A. Salto-Tellez, Manuel Hamilton, Peter W. Sci Rep Article QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath’s flexible design makes it suitable for a wide range of additional image analysis applications across biomedical research. Nature Publishing Group UK 2017-12-04 /pmc/articles/PMC5715110/ /pubmed/29203879 http://dx.doi.org/10.1038/s41598-017-17204-5 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Bankhead, Peter
Loughrey, Maurice B.
Fernández, José A.
Dombrowski, Yvonne
McArt, Darragh G.
Dunne, Philip D.
McQuaid, Stephen
Gray, Ronan T.
Murray, Liam J.
Coleman, Helen G.
James, Jacqueline A.
Salto-Tellez, Manuel
Hamilton, Peter W.
QuPath: Open source software for digital pathology image analysis
title QuPath: Open source software for digital pathology image analysis
title_full QuPath: Open source software for digital pathology image analysis
title_fullStr QuPath: Open source software for digital pathology image analysis
title_full_unstemmed QuPath: Open source software for digital pathology image analysis
title_short QuPath: Open source software for digital pathology image analysis
title_sort qupath: open source software for digital pathology image analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715110/
https://www.ncbi.nlm.nih.gov/pubmed/29203879
http://dx.doi.org/10.1038/s41598-017-17204-5
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