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Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients

People of East Asian ethnicity have a different prevalence of and show unique clinical characteristics and tumor histology of oncogenic mutations. However, only limited studies have explored the landscape of genomic alterations in lung adenocarcinoma derived from Asian patients thus far. In this sin...

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Autores principales: Liu, Liping, Liu, Jilong, Shao, Di, Deng, Qiuhua, Tang, Hailing, Liu, Zu, Chen, Xuewei, Guo, Fengming, Lin, Yongping, Mao, Mao, Kristiansen, Karsten, Ye, Mingzhi, He, Jianxing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715245/
https://www.ncbi.nlm.nih.gov/pubmed/28949084
http://dx.doi.org/10.1111/cas.13410
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author Liu, Liping
Liu, Jilong
Shao, Di
Deng, Qiuhua
Tang, Hailing
Liu, Zu
Chen, Xuewei
Guo, Fengming
Lin, Yongping
Mao, Mao
Kristiansen, Karsten
Ye, Mingzhi
He, Jianxing
author_facet Liu, Liping
Liu, Jilong
Shao, Di
Deng, Qiuhua
Tang, Hailing
Liu, Zu
Chen, Xuewei
Guo, Fengming
Lin, Yongping
Mao, Mao
Kristiansen, Karsten
Ye, Mingzhi
He, Jianxing
author_sort Liu, Liping
collection PubMed
description People of East Asian ethnicity have a different prevalence of and show unique clinical characteristics and tumor histology of oncogenic mutations. However, only limited studies have explored the landscape of genomic alterations in lung adenocarcinoma derived from Asian patients thus far. In this single‐center study, with an aim to elucidate the mutational profile of lung cancer in people of Chinese ethnicity and to use the obtained information to guide decision‐making for treatment, we employed a well‐validated assay to perform comprehensive genomic characterization of tumor specimens from 306 Chinese lung cancer patients. A total of 845 individual genomic alterations were found in 145 tumor‐related genes with a median of 2.8 alterations (range: 1–18) per sample. The most frequently mutated genes were EGFR (46.7%), TP53 (21.2%), ALK (12.1%; 8.8% of mutation and 3.3% of rearrangement) and KRAS (10.1%). Upon comparison with the Cancer Genome Atlas dataset, we found that EGFR was mutated at a much higher frequency in our cohort than in Caucasians, whereas KRAS was only found in 10.1% of our Chinese patients. Clinically relevant genomic alterations were identified in 185 (60.5%) patients, including 50% in adenocarcinoma patients and 14% in squamous cell carcinoma patients. Our findings suggest that the Asian ethnicity is significantly different from the Caucasian ethnicity with regard to the presence of somatic driver mutations. Furthermore, we showed that the use of a comprehensive genotyping approach could help identify actionable genomic alterations that have potential impact on therapeutic decisions.
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spelling pubmed-57152452017-12-08 Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients Liu, Liping Liu, Jilong Shao, Di Deng, Qiuhua Tang, Hailing Liu, Zu Chen, Xuewei Guo, Fengming Lin, Yongping Mao, Mao Kristiansen, Karsten Ye, Mingzhi He, Jianxing Cancer Sci Original Articles People of East Asian ethnicity have a different prevalence of and show unique clinical characteristics and tumor histology of oncogenic mutations. However, only limited studies have explored the landscape of genomic alterations in lung adenocarcinoma derived from Asian patients thus far. In this single‐center study, with an aim to elucidate the mutational profile of lung cancer in people of Chinese ethnicity and to use the obtained information to guide decision‐making for treatment, we employed a well‐validated assay to perform comprehensive genomic characterization of tumor specimens from 306 Chinese lung cancer patients. A total of 845 individual genomic alterations were found in 145 tumor‐related genes with a median of 2.8 alterations (range: 1–18) per sample. The most frequently mutated genes were EGFR (46.7%), TP53 (21.2%), ALK (12.1%; 8.8% of mutation and 3.3% of rearrangement) and KRAS (10.1%). Upon comparison with the Cancer Genome Atlas dataset, we found that EGFR was mutated at a much higher frequency in our cohort than in Caucasians, whereas KRAS was only found in 10.1% of our Chinese patients. Clinically relevant genomic alterations were identified in 185 (60.5%) patients, including 50% in adenocarcinoma patients and 14% in squamous cell carcinoma patients. Our findings suggest that the Asian ethnicity is significantly different from the Caucasian ethnicity with regard to the presence of somatic driver mutations. Furthermore, we showed that the use of a comprehensive genotyping approach could help identify actionable genomic alterations that have potential impact on therapeutic decisions. John Wiley and Sons Inc. 2017-10-20 2017-12 /pmc/articles/PMC5715245/ /pubmed/28949084 http://dx.doi.org/10.1111/cas.13410 Text en © 2017 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Articles
Liu, Liping
Liu, Jilong
Shao, Di
Deng, Qiuhua
Tang, Hailing
Liu, Zu
Chen, Xuewei
Guo, Fengming
Lin, Yongping
Mao, Mao
Kristiansen, Karsten
Ye, Mingzhi
He, Jianxing
Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients
title Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients
title_full Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients
title_fullStr Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients
title_full_unstemmed Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients
title_short Comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in East Asian patients
title_sort comprehensive genomic profiling of lung cancer using a validated panel to explore therapeutic targets in east asian patients
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715245/
https://www.ncbi.nlm.nih.gov/pubmed/28949084
http://dx.doi.org/10.1111/cas.13410
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