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Opbp is a new architectural/insulator protein required for ribosomal gene expression
A special class of poorly characterized architectural proteins is required for chromatin topology and enhancer–promoter interactions. Here, we identify Opbp as a new Drosophila architectural protein, interacting with CP190 both in vivo and in vitro. Opbp binds to a very restrictive set of genomic re...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5716193/ https://www.ncbi.nlm.nih.gov/pubmed/29036346 http://dx.doi.org/10.1093/nar/gkx840 |
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author | Zolotarev, Nikolay Maksimenko, Oksana Kyrchanova, Olga Sokolinskaya, Elena Osadchiy, Igor Girardot, Charles Bonchuk, Artem Ciglar, Lucia Furlong, Eileen E. M. Georgiev, Pavel |
author_facet | Zolotarev, Nikolay Maksimenko, Oksana Kyrchanova, Olga Sokolinskaya, Elena Osadchiy, Igor Girardot, Charles Bonchuk, Artem Ciglar, Lucia Furlong, Eileen E. M. Georgiev, Pavel |
author_sort | Zolotarev, Nikolay |
collection | PubMed |
description | A special class of poorly characterized architectural proteins is required for chromatin topology and enhancer–promoter interactions. Here, we identify Opbp as a new Drosophila architectural protein, interacting with CP190 both in vivo and in vitro. Opbp binds to a very restrictive set of genomic regions, through a rare sequence specific motif. These sites are co-bound by CP190 in vivo, and generally located at bidirectional promoters of ribosomal protein genes. We show that Opbp is essential for viability, and loss of opbp function, or destruction of its motif, leads to reduced ribosomal protein gene expression, indicating a functional role in promoter activation. As characteristic of architectural/insulator proteins, the Opbp motif is sufficient for distance-dependent reporter gene activation and enhancer-blocking activity, suggesting an Opbp-mediated enhancer–promoter interaction. Rather than having a constitutive role, Opbp represents a new type of architectural protein with a very restricted, yet essential, function in regulation of housekeeping gene expression. |
format | Online Article Text |
id | pubmed-5716193 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57161932017-12-08 Opbp is a new architectural/insulator protein required for ribosomal gene expression Zolotarev, Nikolay Maksimenko, Oksana Kyrchanova, Olga Sokolinskaya, Elena Osadchiy, Igor Girardot, Charles Bonchuk, Artem Ciglar, Lucia Furlong, Eileen E. M. Georgiev, Pavel Nucleic Acids Res Gene regulation, Chromatin and Epigenetics A special class of poorly characterized architectural proteins is required for chromatin topology and enhancer–promoter interactions. Here, we identify Opbp as a new Drosophila architectural protein, interacting with CP190 both in vivo and in vitro. Opbp binds to a very restrictive set of genomic regions, through a rare sequence specific motif. These sites are co-bound by CP190 in vivo, and generally located at bidirectional promoters of ribosomal protein genes. We show that Opbp is essential for viability, and loss of opbp function, or destruction of its motif, leads to reduced ribosomal protein gene expression, indicating a functional role in promoter activation. As characteristic of architectural/insulator proteins, the Opbp motif is sufficient for distance-dependent reporter gene activation and enhancer-blocking activity, suggesting an Opbp-mediated enhancer–promoter interaction. Rather than having a constitutive role, Opbp represents a new type of architectural protein with a very restricted, yet essential, function in regulation of housekeeping gene expression. Oxford University Press 2017-12-01 2017-09-25 /pmc/articles/PMC5716193/ /pubmed/29036346 http://dx.doi.org/10.1093/nar/gkx840 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Gene regulation, Chromatin and Epigenetics Zolotarev, Nikolay Maksimenko, Oksana Kyrchanova, Olga Sokolinskaya, Elena Osadchiy, Igor Girardot, Charles Bonchuk, Artem Ciglar, Lucia Furlong, Eileen E. M. Georgiev, Pavel Opbp is a new architectural/insulator protein required for ribosomal gene expression |
title | Opbp is a new architectural/insulator protein required for ribosomal gene expression |
title_full | Opbp is a new architectural/insulator protein required for ribosomal gene expression |
title_fullStr | Opbp is a new architectural/insulator protein required for ribosomal gene expression |
title_full_unstemmed | Opbp is a new architectural/insulator protein required for ribosomal gene expression |
title_short | Opbp is a new architectural/insulator protein required for ribosomal gene expression |
title_sort | opbp is a new architectural/insulator protein required for ribosomal gene expression |
topic | Gene regulation, Chromatin and Epigenetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5716193/ https://www.ncbi.nlm.nih.gov/pubmed/29036346 http://dx.doi.org/10.1093/nar/gkx840 |
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