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Analysis of miRNA expression profiling in human umbilical vein endothelial cells affected by heat stress

To investigate the regulation of endothelial cell (EC) microRNAs (miRNAs) altered by heat stress, miRNA microarrays and bioinformatics methods were used to determine changes in miRNA profiles and the pathophysiological characteristics of differentially expressed miRNAs. A total of 31 differentially...

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Autores principales: Liu, Jie, Zhu, Guoguo, Xu, Siya, Liu, Shixin, Lu, Qiping, Tang, Zhongzhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5716433/
https://www.ncbi.nlm.nih.gov/pubmed/29039486
http://dx.doi.org/10.3892/ijmm.2017.3174
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author Liu, Jie
Zhu, Guoguo
Xu, Siya
Liu, Shixin
Lu, Qiping
Tang, Zhongzhi
author_facet Liu, Jie
Zhu, Guoguo
Xu, Siya
Liu, Shixin
Lu, Qiping
Tang, Zhongzhi
author_sort Liu, Jie
collection PubMed
description To investigate the regulation of endothelial cell (EC) microRNAs (miRNAs) altered by heat stress, miRNA microarrays and bioinformatics methods were used to determine changes in miRNA profiles and the pathophysiological characteristics of differentially expressed miRNAs. A total of 31 differentially expressed miRNAs were identified, including 20 downregulated and 11 upregulated miRNAs. Gene Ontology (GO) enrichment analysis revealed that the validated targets of the differentially expressed miRNAs were significantly enriched in gene transcription regulation. The pathways were also significantly enriched in the Kyoto Encyclopedia of Genes and Genomes analysis, and most were cancer-related, including the mitogen-activated protein kinase signaling pathway, pathways involved in cancer, the Wnt signaling pathway, the Hippo signaling pathway, proteoglycans involved in cancer and axon guidance. The miRNA-gene and miRNA-GO network analyses revealed several hub miRNAs, genes and functions. Notably, miR-3613-3p played a dominant role in both networks. MAP3K2, MGAT4A, TGFBR1, UBE2R2 and SMAD4 were most likely to be controlled by the altered miRNAs in the miRNA-gene network. The miRNA-GO network analysis revealed significantly complicated associations between miRNAs and different functions, and that the significantly enriched functions targeted by the differentially expressed miRNAs were mostly involved in regulating gene transcription. The present study demonstrated that miRNAs are involved in the pathophysiology of heat-treated ECs. Understanding the functions of miRNAs may provide novel insights into the molecular mechanisms underlying the heat-induced pathophysiology of ECs.
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spelling pubmed-57164332017-12-10 Analysis of miRNA expression profiling in human umbilical vein endothelial cells affected by heat stress Liu, Jie Zhu, Guoguo Xu, Siya Liu, Shixin Lu, Qiping Tang, Zhongzhi Int J Mol Med Articles To investigate the regulation of endothelial cell (EC) microRNAs (miRNAs) altered by heat stress, miRNA microarrays and bioinformatics methods were used to determine changes in miRNA profiles and the pathophysiological characteristics of differentially expressed miRNAs. A total of 31 differentially expressed miRNAs were identified, including 20 downregulated and 11 upregulated miRNAs. Gene Ontology (GO) enrichment analysis revealed that the validated targets of the differentially expressed miRNAs were significantly enriched in gene transcription regulation. The pathways were also significantly enriched in the Kyoto Encyclopedia of Genes and Genomes analysis, and most were cancer-related, including the mitogen-activated protein kinase signaling pathway, pathways involved in cancer, the Wnt signaling pathway, the Hippo signaling pathway, proteoglycans involved in cancer and axon guidance. The miRNA-gene and miRNA-GO network analyses revealed several hub miRNAs, genes and functions. Notably, miR-3613-3p played a dominant role in both networks. MAP3K2, MGAT4A, TGFBR1, UBE2R2 and SMAD4 were most likely to be controlled by the altered miRNAs in the miRNA-gene network. The miRNA-GO network analysis revealed significantly complicated associations between miRNAs and different functions, and that the significantly enriched functions targeted by the differentially expressed miRNAs were mostly involved in regulating gene transcription. The present study demonstrated that miRNAs are involved in the pathophysiology of heat-treated ECs. Understanding the functions of miRNAs may provide novel insights into the molecular mechanisms underlying the heat-induced pathophysiology of ECs. D.A. Spandidos 2017-12 2017-10-05 /pmc/articles/PMC5716433/ /pubmed/29039486 http://dx.doi.org/10.3892/ijmm.2017.3174 Text en Copyright: © Liu et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Liu, Jie
Zhu, Guoguo
Xu, Siya
Liu, Shixin
Lu, Qiping
Tang, Zhongzhi
Analysis of miRNA expression profiling in human umbilical vein endothelial cells affected by heat stress
title Analysis of miRNA expression profiling in human umbilical vein endothelial cells affected by heat stress
title_full Analysis of miRNA expression profiling in human umbilical vein endothelial cells affected by heat stress
title_fullStr Analysis of miRNA expression profiling in human umbilical vein endothelial cells affected by heat stress
title_full_unstemmed Analysis of miRNA expression profiling in human umbilical vein endothelial cells affected by heat stress
title_short Analysis of miRNA expression profiling in human umbilical vein endothelial cells affected by heat stress
title_sort analysis of mirna expression profiling in human umbilical vein endothelial cells affected by heat stress
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5716433/
https://www.ncbi.nlm.nih.gov/pubmed/29039486
http://dx.doi.org/10.3892/ijmm.2017.3174
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