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Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens
A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5717847/ https://www.ncbi.nlm.nih.gov/pubmed/29225729 http://dx.doi.org/10.1186/s40793-017-0289-4 |
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author | Martínez-Raudales, Inés De La Cruz-Rodríguez, Yumiko Alvarado-Gutiérrez, Alejandro Vega-Arreguín, Julio Fraire-Mayorga, Ahuitz Alvarado-Rodríguez, Miguel Balderas-Hernández, Victor Fraire-Velázquez, Saúl |
author_facet | Martínez-Raudales, Inés De La Cruz-Rodríguez, Yumiko Alvarado-Gutiérrez, Alejandro Vega-Arreguín, Julio Fraire-Mayorga, Ahuitz Alvarado-Rodríguez, Miguel Balderas-Hernández, Victor Fraire-Velázquez, Saúl |
author_sort | Martínez-Raudales, Inés |
collection | PubMed |
description | A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root rot. These phytopathogens include Phytophthora capsici, Fusarium solani, Fusarium oxysporum and Rhizoctonia solani. Furthermore, the 2A-2B strain is an indolacetic acid producer, and a plant inducer of PR1, which is an induced systemic resistance related gene in chili pepper plantlets. Whole genome sequencing was performed to generate a draft genome assembly of 3.953 MB with 46.36% of GC content, and a N50 of 294,737. The genome contains 3713 protein coding genes and 89 RNA genes. Moreover, comparative genome analysis revealed that the 2A-2B strain had the greatest identity (98.4%) with Bacillus velezensis. |
format | Online Article Text |
id | pubmed-5717847 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57178472017-12-08 Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens Martínez-Raudales, Inés De La Cruz-Rodríguez, Yumiko Alvarado-Gutiérrez, Alejandro Vega-Arreguín, Julio Fraire-Mayorga, Ahuitz Alvarado-Rodríguez, Miguel Balderas-Hernández, Victor Fraire-Velázquez, Saúl Stand Genomic Sci Extended Genome Report A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root rot. These phytopathogens include Phytophthora capsici, Fusarium solani, Fusarium oxysporum and Rhizoctonia solani. Furthermore, the 2A-2B strain is an indolacetic acid producer, and a plant inducer of PR1, which is an induced systemic resistance related gene in chili pepper plantlets. Whole genome sequencing was performed to generate a draft genome assembly of 3.953 MB with 46.36% of GC content, and a N50 of 294,737. The genome contains 3713 protein coding genes and 89 RNA genes. Moreover, comparative genome analysis revealed that the 2A-2B strain had the greatest identity (98.4%) with Bacillus velezensis. BioMed Central 2017-12-05 /pmc/articles/PMC5717847/ /pubmed/29225729 http://dx.doi.org/10.1186/s40793-017-0289-4 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Extended Genome Report Martínez-Raudales, Inés De La Cruz-Rodríguez, Yumiko Alvarado-Gutiérrez, Alejandro Vega-Arreguín, Julio Fraire-Mayorga, Ahuitz Alvarado-Rodríguez, Miguel Balderas-Hernández, Victor Fraire-Velázquez, Saúl Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens |
title | Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens |
title_full | Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens |
title_fullStr | Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens |
title_full_unstemmed | Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens |
title_short | Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens |
title_sort | draft genome sequence of bacillus velezensis 2a-2b strain: a rhizospheric inhabitant of sporobolus airoides (torr.) torr., with antifungal activity against root rot causing phytopathogens |
topic | Extended Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5717847/ https://www.ncbi.nlm.nih.gov/pubmed/29225729 http://dx.doi.org/10.1186/s40793-017-0289-4 |
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