Cargando…

Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens

A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root...

Descripción completa

Detalles Bibliográficos
Autores principales: Martínez-Raudales, Inés, De La Cruz-Rodríguez, Yumiko, Alvarado-Gutiérrez, Alejandro, Vega-Arreguín, Julio, Fraire-Mayorga, Ahuitz, Alvarado-Rodríguez, Miguel, Balderas-Hernández, Victor, Fraire-Velázquez, Saúl
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5717847/
https://www.ncbi.nlm.nih.gov/pubmed/29225729
http://dx.doi.org/10.1186/s40793-017-0289-4
_version_ 1783284223388418048
author Martínez-Raudales, Inés
De La Cruz-Rodríguez, Yumiko
Alvarado-Gutiérrez, Alejandro
Vega-Arreguín, Julio
Fraire-Mayorga, Ahuitz
Alvarado-Rodríguez, Miguel
Balderas-Hernández, Victor
Fraire-Velázquez, Saúl
author_facet Martínez-Raudales, Inés
De La Cruz-Rodríguez, Yumiko
Alvarado-Gutiérrez, Alejandro
Vega-Arreguín, Julio
Fraire-Mayorga, Ahuitz
Alvarado-Rodríguez, Miguel
Balderas-Hernández, Victor
Fraire-Velázquez, Saúl
author_sort Martínez-Raudales, Inés
collection PubMed
description A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root rot. These phytopathogens include Phytophthora capsici, Fusarium solani, Fusarium oxysporum and Rhizoctonia solani. Furthermore, the 2A-2B strain is an indolacetic acid producer, and a plant inducer of PR1, which is an induced systemic resistance related gene in chili pepper plantlets. Whole genome sequencing was performed to generate a draft genome assembly of 3.953 MB with 46.36% of GC content, and a N50 of 294,737. The genome contains 3713 protein coding genes and 89 RNA genes. Moreover, comparative genome analysis revealed that the 2A-2B strain had the greatest identity (98.4%) with Bacillus velezensis.
format Online
Article
Text
id pubmed-5717847
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-57178472017-12-08 Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens Martínez-Raudales, Inés De La Cruz-Rodríguez, Yumiko Alvarado-Gutiérrez, Alejandro Vega-Arreguín, Julio Fraire-Mayorga, Ahuitz Alvarado-Rodríguez, Miguel Balderas-Hernández, Victor Fraire-Velázquez, Saúl Stand Genomic Sci Extended Genome Report A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibited at least 60% of growth inhibition of virulent isolates of phytopathogens causing root rot. These phytopathogens include Phytophthora capsici, Fusarium solani, Fusarium oxysporum and Rhizoctonia solani. Furthermore, the 2A-2B strain is an indolacetic acid producer, and a plant inducer of PR1, which is an induced systemic resistance related gene in chili pepper plantlets. Whole genome sequencing was performed to generate a draft genome assembly of 3.953 MB with 46.36% of GC content, and a N50 of 294,737. The genome contains 3713 protein coding genes and 89 RNA genes. Moreover, comparative genome analysis revealed that the 2A-2B strain had the greatest identity (98.4%) with Bacillus velezensis. BioMed Central 2017-12-05 /pmc/articles/PMC5717847/ /pubmed/29225729 http://dx.doi.org/10.1186/s40793-017-0289-4 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Extended Genome Report
Martínez-Raudales, Inés
De La Cruz-Rodríguez, Yumiko
Alvarado-Gutiérrez, Alejandro
Vega-Arreguín, Julio
Fraire-Mayorga, Ahuitz
Alvarado-Rodríguez, Miguel
Balderas-Hernández, Victor
Fraire-Velázquez, Saúl
Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens
title Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens
title_full Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens
title_fullStr Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens
title_full_unstemmed Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens
title_short Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens
title_sort draft genome sequence of bacillus velezensis 2a-2b strain: a rhizospheric inhabitant of sporobolus airoides (torr.) torr., with antifungal activity against root rot causing phytopathogens
topic Extended Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5717847/
https://www.ncbi.nlm.nih.gov/pubmed/29225729
http://dx.doi.org/10.1186/s40793-017-0289-4
work_keys_str_mv AT martinezraudalesines draftgenomesequenceofbacillusvelezensis2a2bstrainarhizosphericinhabitantofsporobolusairoidestorrtorrwithantifungalactivityagainstrootrotcausingphytopathogens
AT delacruzrodriguezyumiko draftgenomesequenceofbacillusvelezensis2a2bstrainarhizosphericinhabitantofsporobolusairoidestorrtorrwithantifungalactivityagainstrootrotcausingphytopathogens
AT alvaradogutierrezalejandro draftgenomesequenceofbacillusvelezensis2a2bstrainarhizosphericinhabitantofsporobolusairoidestorrtorrwithantifungalactivityagainstrootrotcausingphytopathogens
AT vegaarreguinjulio draftgenomesequenceofbacillusvelezensis2a2bstrainarhizosphericinhabitantofsporobolusairoidestorrtorrwithantifungalactivityagainstrootrotcausingphytopathogens
AT frairemayorgaahuitz draftgenomesequenceofbacillusvelezensis2a2bstrainarhizosphericinhabitantofsporobolusairoidestorrtorrwithantifungalactivityagainstrootrotcausingphytopathogens
AT alvaradorodriguezmiguel draftgenomesequenceofbacillusvelezensis2a2bstrainarhizosphericinhabitantofsporobolusairoidestorrtorrwithantifungalactivityagainstrootrotcausingphytopathogens
AT balderashernandezvictor draftgenomesequenceofbacillusvelezensis2a2bstrainarhizosphericinhabitantofsporobolusairoidestorrtorrwithantifungalactivityagainstrootrotcausingphytopathogens
AT frairevelazquezsaul draftgenomesequenceofbacillusvelezensis2a2bstrainarhizosphericinhabitantofsporobolusairoidestorrtorrwithantifungalactivityagainstrootrotcausingphytopathogens