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The effect of spatial randomness on the average fixation time of mutants
The mean conditional fixation time of a mutant is an important measure of stochastic population dynamics, widely studied in ecology and evolution. Here, we investigate the effect of spatial randomness on the mean conditional fixation time of mutants in a constant population of cells, N. Specifically...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5720826/ https://www.ncbi.nlm.nih.gov/pubmed/29176825 http://dx.doi.org/10.1371/journal.pcbi.1005864 |
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author | Farhang-Sardroodi, Suzan Darooneh, Amir H. Nikbakht, Moladad Komarova, Natalia L. Kohandel, Mohammad |
author_facet | Farhang-Sardroodi, Suzan Darooneh, Amir H. Nikbakht, Moladad Komarova, Natalia L. Kohandel, Mohammad |
author_sort | Farhang-Sardroodi, Suzan |
collection | PubMed |
description | The mean conditional fixation time of a mutant is an important measure of stochastic population dynamics, widely studied in ecology and evolution. Here, we investigate the effect of spatial randomness on the mean conditional fixation time of mutants in a constant population of cells, N. Specifically, we assume that fitness values of wild type cells and mutants at different locations come from given probability distributions and do not change in time. We study spatial arrangements of cells on regular graphs with different degrees, from the circle to the complete graph, and vary assumptions on the fitness probability distributions. Some examples include: identical probability distributions for wild types and mutants; cases when only one of the cell types has random fitness values while the other has deterministic fitness; and cases where the mutants are advantaged or disadvantaged. Using analytical calculations and stochastic numerical simulations, we find that randomness has a strong impact on fixation time. In the case of complete graphs, randomness accelerates mutant fixation for all population sizes, and in the case of circular graphs, randomness delays mutant fixation for N larger than a threshold value (for small values of N, different behaviors are observed depending on the fitness distribution functions). These results emphasize fundamental differences in population dynamics under different assumptions on cell connectedness. They are explained by the existence of randomly occurring “dead zones” that can significantly delay fixation on networks with low connectivity; and by the existence of randomly occurring “lucky zones” that can facilitate fixation on networks of high connectivity. Results for death-birth and birth-death formulations of the Moran process, as well as for the (haploid) Wright Fisher model are presented. |
format | Online Article Text |
id | pubmed-5720826 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-57208262017-12-15 The effect of spatial randomness on the average fixation time of mutants Farhang-Sardroodi, Suzan Darooneh, Amir H. Nikbakht, Moladad Komarova, Natalia L. Kohandel, Mohammad PLoS Comput Biol Research Article The mean conditional fixation time of a mutant is an important measure of stochastic population dynamics, widely studied in ecology and evolution. Here, we investigate the effect of spatial randomness on the mean conditional fixation time of mutants in a constant population of cells, N. Specifically, we assume that fitness values of wild type cells and mutants at different locations come from given probability distributions and do not change in time. We study spatial arrangements of cells on regular graphs with different degrees, from the circle to the complete graph, and vary assumptions on the fitness probability distributions. Some examples include: identical probability distributions for wild types and mutants; cases when only one of the cell types has random fitness values while the other has deterministic fitness; and cases where the mutants are advantaged or disadvantaged. Using analytical calculations and stochastic numerical simulations, we find that randomness has a strong impact on fixation time. In the case of complete graphs, randomness accelerates mutant fixation for all population sizes, and in the case of circular graphs, randomness delays mutant fixation for N larger than a threshold value (for small values of N, different behaviors are observed depending on the fitness distribution functions). These results emphasize fundamental differences in population dynamics under different assumptions on cell connectedness. They are explained by the existence of randomly occurring “dead zones” that can significantly delay fixation on networks with low connectivity; and by the existence of randomly occurring “lucky zones” that can facilitate fixation on networks of high connectivity. Results for death-birth and birth-death formulations of the Moran process, as well as for the (haploid) Wright Fisher model are presented. Public Library of Science 2017-11-27 /pmc/articles/PMC5720826/ /pubmed/29176825 http://dx.doi.org/10.1371/journal.pcbi.1005864 Text en © 2017 Farhang-Sardroodi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Farhang-Sardroodi, Suzan Darooneh, Amir H. Nikbakht, Moladad Komarova, Natalia L. Kohandel, Mohammad The effect of spatial randomness on the average fixation time of mutants |
title | The effect of spatial randomness on the average fixation time of mutants |
title_full | The effect of spatial randomness on the average fixation time of mutants |
title_fullStr | The effect of spatial randomness on the average fixation time of mutants |
title_full_unstemmed | The effect of spatial randomness on the average fixation time of mutants |
title_short | The effect of spatial randomness on the average fixation time of mutants |
title_sort | effect of spatial randomness on the average fixation time of mutants |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5720826/ https://www.ncbi.nlm.nih.gov/pubmed/29176825 http://dx.doi.org/10.1371/journal.pcbi.1005864 |
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