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Tree co-occurrence and transcriptomic response to drought

The distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function t...

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Autores principales: Swenson, Nathan G., Iida, Yoshiko, Howe, Robert, Wolf, Amy, Umaña, María Natalia, Petprakob, Krittika, Turner, Benjamin L., Ma, Keping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5722877/
https://www.ncbi.nlm.nih.gov/pubmed/29222461
http://dx.doi.org/10.1038/s41467-017-02034-w
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author Swenson, Nathan G.
Iida, Yoshiko
Howe, Robert
Wolf, Amy
Umaña, María Natalia
Petprakob, Krittika
Turner, Benjamin L.
Ma, Keping
author_facet Swenson, Nathan G.
Iida, Yoshiko
Howe, Robert
Wolf, Amy
Umaña, María Natalia
Petprakob, Krittika
Turner, Benjamin L.
Ma, Keping
author_sort Swenson, Nathan G.
collection PubMed
description The distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function that are related to drought is critical. Here, we perform a community-level analysis of gene expression in relation to experimental drought and relate the similarity in gene set enrichment across species to their natural co-occurrence. Species with similar gene set enrichment in response to experimental drought tend to non-randomly co-occur in a natural stand. We demonstrate that similarity in the transcriptomic response of species to drought is a significantly better indicator of natural co-occurrence than measures of functional trait similarity and phylogenetic relatedness and that transcriptomics has the capacity to greatly enhance ecological investigations of species distributions and community structure.
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spelling pubmed-57228772017-12-11 Tree co-occurrence and transcriptomic response to drought Swenson, Nathan G. Iida, Yoshiko Howe, Robert Wolf, Amy Umaña, María Natalia Petprakob, Krittika Turner, Benjamin L. Ma, Keping Nat Commun Article The distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function that are related to drought is critical. Here, we perform a community-level analysis of gene expression in relation to experimental drought and relate the similarity in gene set enrichment across species to their natural co-occurrence. Species with similar gene set enrichment in response to experimental drought tend to non-randomly co-occur in a natural stand. We demonstrate that similarity in the transcriptomic response of species to drought is a significantly better indicator of natural co-occurrence than measures of functional trait similarity and phylogenetic relatedness and that transcriptomics has the capacity to greatly enhance ecological investigations of species distributions and community structure. Nature Publishing Group UK 2017-12-08 /pmc/articles/PMC5722877/ /pubmed/29222461 http://dx.doi.org/10.1038/s41467-017-02034-w Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Swenson, Nathan G.
Iida, Yoshiko
Howe, Robert
Wolf, Amy
Umaña, María Natalia
Petprakob, Krittika
Turner, Benjamin L.
Ma, Keping
Tree co-occurrence and transcriptomic response to drought
title Tree co-occurrence and transcriptomic response to drought
title_full Tree co-occurrence and transcriptomic response to drought
title_fullStr Tree co-occurrence and transcriptomic response to drought
title_full_unstemmed Tree co-occurrence and transcriptomic response to drought
title_short Tree co-occurrence and transcriptomic response to drought
title_sort tree co-occurrence and transcriptomic response to drought
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5722877/
https://www.ncbi.nlm.nih.gov/pubmed/29222461
http://dx.doi.org/10.1038/s41467-017-02034-w
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