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Tree co-occurrence and transcriptomic response to drought
The distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5722877/ https://www.ncbi.nlm.nih.gov/pubmed/29222461 http://dx.doi.org/10.1038/s41467-017-02034-w |
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author | Swenson, Nathan G. Iida, Yoshiko Howe, Robert Wolf, Amy Umaña, María Natalia Petprakob, Krittika Turner, Benjamin L. Ma, Keping |
author_facet | Swenson, Nathan G. Iida, Yoshiko Howe, Robert Wolf, Amy Umaña, María Natalia Petprakob, Krittika Turner, Benjamin L. Ma, Keping |
author_sort | Swenson, Nathan G. |
collection | PubMed |
description | The distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function that are related to drought is critical. Here, we perform a community-level analysis of gene expression in relation to experimental drought and relate the similarity in gene set enrichment across species to their natural co-occurrence. Species with similar gene set enrichment in response to experimental drought tend to non-randomly co-occur in a natural stand. We demonstrate that similarity in the transcriptomic response of species to drought is a significantly better indicator of natural co-occurrence than measures of functional trait similarity and phylogenetic relatedness and that transcriptomics has the capacity to greatly enhance ecological investigations of species distributions and community structure. |
format | Online Article Text |
id | pubmed-5722877 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57228772017-12-11 Tree co-occurrence and transcriptomic response to drought Swenson, Nathan G. Iida, Yoshiko Howe, Robert Wolf, Amy Umaña, María Natalia Petprakob, Krittika Turner, Benjamin L. Ma, Keping Nat Commun Article The distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function that are related to drought is critical. Here, we perform a community-level analysis of gene expression in relation to experimental drought and relate the similarity in gene set enrichment across species to their natural co-occurrence. Species with similar gene set enrichment in response to experimental drought tend to non-randomly co-occur in a natural stand. We demonstrate that similarity in the transcriptomic response of species to drought is a significantly better indicator of natural co-occurrence than measures of functional trait similarity and phylogenetic relatedness and that transcriptomics has the capacity to greatly enhance ecological investigations of species distributions and community structure. Nature Publishing Group UK 2017-12-08 /pmc/articles/PMC5722877/ /pubmed/29222461 http://dx.doi.org/10.1038/s41467-017-02034-w Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Swenson, Nathan G. Iida, Yoshiko Howe, Robert Wolf, Amy Umaña, María Natalia Petprakob, Krittika Turner, Benjamin L. Ma, Keping Tree co-occurrence and transcriptomic response to drought |
title | Tree co-occurrence and transcriptomic response to drought |
title_full | Tree co-occurrence and transcriptomic response to drought |
title_fullStr | Tree co-occurrence and transcriptomic response to drought |
title_full_unstemmed | Tree co-occurrence and transcriptomic response to drought |
title_short | Tree co-occurrence and transcriptomic response to drought |
title_sort | tree co-occurrence and transcriptomic response to drought |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5722877/ https://www.ncbi.nlm.nih.gov/pubmed/29222461 http://dx.doi.org/10.1038/s41467-017-02034-w |
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