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Dissimilarity for functional data clustering based on smoothing parameter commutation
Many studies measure the same type of information longitudinally on the same subject at multiple time points, and clustering of such functional data has many important applications. We propose a novel and easy method to implement dissimilarity measure for functional data clustering based on smoothin...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723154/ https://www.ncbi.nlm.nih.gov/pubmed/28535712 http://dx.doi.org/10.1177/0962280217710050 |
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author | Tzeng, ShengLi Hennig, Christian Li, Yu-Fen Lin, Chien-Ju |
author_facet | Tzeng, ShengLi Hennig, Christian Li, Yu-Fen Lin, Chien-Ju |
author_sort | Tzeng, ShengLi |
collection | PubMed |
description | Many studies measure the same type of information longitudinally on the same subject at multiple time points, and clustering of such functional data has many important applications. We propose a novel and easy method to implement dissimilarity measure for functional data clustering based on smoothing splines and smoothing parameter commutation. This method handles data observed at regular or irregular time points in the same way. We measure the dissimilarity between subjects based on varying curve estimates with pairwise commutation of smoothing parameters. The intuition is that smoothing parameters of smoothing splines reflect the inverse of the signal-to-noise ratios and that when applying an identical smoothing parameter the smoothed curves for two similar subjects are expected to be close. Our method takes into account the estimation uncertainty using smoothing parameter commutation and is not strongly affected by outliers. It can also be used for outlier detection. The effectiveness of our proposal is shown by simulations comparing it to other dissimilarity measures and by a real application to methadone dosage maintenance levels. |
format | Online Article Text |
id | pubmed-5723154 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-57231542018-10-24 Dissimilarity for functional data clustering based on smoothing parameter commutation Tzeng, ShengLi Hennig, Christian Li, Yu-Fen Lin, Chien-Ju Stat Methods Med Res Articles Many studies measure the same type of information longitudinally on the same subject at multiple time points, and clustering of such functional data has many important applications. We propose a novel and easy method to implement dissimilarity measure for functional data clustering based on smoothing splines and smoothing parameter commutation. This method handles data observed at regular or irregular time points in the same way. We measure the dissimilarity between subjects based on varying curve estimates with pairwise commutation of smoothing parameters. The intuition is that smoothing parameters of smoothing splines reflect the inverse of the signal-to-noise ratios and that when applying an identical smoothing parameter the smoothed curves for two similar subjects are expected to be close. Our method takes into account the estimation uncertainty using smoothing parameter commutation and is not strongly affected by outliers. It can also be used for outlier detection. The effectiveness of our proposal is shown by simulations comparing it to other dissimilarity measures and by a real application to methadone dosage maintenance levels. SAGE Publications 2017-05-24 2018-11 /pmc/articles/PMC5723154/ /pubmed/28535712 http://dx.doi.org/10.1177/0962280217710050 Text en © The Author(s) 2017 http://creativecommons.org/licenses/by/4.0/ This article is distributed under the terms of the Creative Commons Attribution 4.0 License (http://www.creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Articles Tzeng, ShengLi Hennig, Christian Li, Yu-Fen Lin, Chien-Ju Dissimilarity for functional data clustering based on smoothing parameter commutation |
title | Dissimilarity for functional data clustering based on smoothing parameter commutation |
title_full | Dissimilarity for functional data clustering based on smoothing parameter commutation |
title_fullStr | Dissimilarity for functional data clustering based on smoothing parameter commutation |
title_full_unstemmed | Dissimilarity for functional data clustering based on smoothing parameter commutation |
title_short | Dissimilarity for functional data clustering based on smoothing parameter commutation |
title_sort | dissimilarity for functional data clustering based on smoothing parameter commutation |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723154/ https://www.ncbi.nlm.nih.gov/pubmed/28535712 http://dx.doi.org/10.1177/0962280217710050 |
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