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Data visualizations to detect systematic errors in laboratory assay results

The measurement of concentrations of drugs and endogenous substances is widely used in basic and clinical pharmacology research and service tasks. Using data science‐derived visualizations of laboratory data, it is demonstrated on a real‐life example that basic statistical exploration of laboratory...

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Autor principal: Lötsch, Jörn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723702/
https://www.ncbi.nlm.nih.gov/pubmed/29226627
http://dx.doi.org/10.1002/prp2.369
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author Lötsch, Jörn
author_facet Lötsch, Jörn
author_sort Lötsch, Jörn
collection PubMed
description The measurement of concentrations of drugs and endogenous substances is widely used in basic and clinical pharmacology research and service tasks. Using data science‐derived visualizations of laboratory data, it is demonstrated on a real‐life example that basic statistical exploration of laboratory assay results or advised standard visual methods of data inspection may fall short in detecting systematic laboratory errors. For example, data pathologies such as generating always the same value in all probes of a particular assay run may pass undetected when using standard methods of data quality check. It is shown that the use of different data visualizations that emphasize different views of the data may enhance the detection of systematic laboratory errors. A dotplot of single data in the order of assay is proposed that provides an overview on the data range, outliers and a particular type of systematic errors where similar values are wrongly measured in all probes.
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spelling pubmed-57237022017-12-13 Data visualizations to detect systematic errors in laboratory assay results Lötsch, Jörn Pharmacol Res Perspect Original Articles The measurement of concentrations of drugs and endogenous substances is widely used in basic and clinical pharmacology research and service tasks. Using data science‐derived visualizations of laboratory data, it is demonstrated on a real‐life example that basic statistical exploration of laboratory assay results or advised standard visual methods of data inspection may fall short in detecting systematic laboratory errors. For example, data pathologies such as generating always the same value in all probes of a particular assay run may pass undetected when using standard methods of data quality check. It is shown that the use of different data visualizations that emphasize different views of the data may enhance the detection of systematic laboratory errors. A dotplot of single data in the order of assay is proposed that provides an overview on the data range, outliers and a particular type of systematic errors where similar values are wrongly measured in all probes. John Wiley and Sons Inc. 2017-11-21 /pmc/articles/PMC5723702/ /pubmed/29226627 http://dx.doi.org/10.1002/prp2.369 Text en © 2017 The Authors. Pharmacology Research & Perspectives published by John Wiley & Sons Ltd, British Pharmacological Society and American Society for Pharmacology and Experimental Therapeutics. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Articles
Lötsch, Jörn
Data visualizations to detect systematic errors in laboratory assay results
title Data visualizations to detect systematic errors in laboratory assay results
title_full Data visualizations to detect systematic errors in laboratory assay results
title_fullStr Data visualizations to detect systematic errors in laboratory assay results
title_full_unstemmed Data visualizations to detect systematic errors in laboratory assay results
title_short Data visualizations to detect systematic errors in laboratory assay results
title_sort data visualizations to detect systematic errors in laboratory assay results
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723702/
https://www.ncbi.nlm.nih.gov/pubmed/29226627
http://dx.doi.org/10.1002/prp2.369
work_keys_str_mv AT lotschjorn datavisualizationstodetectsystematicerrorsinlaboratoryassayresults