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Data visualizations to detect systematic errors in laboratory assay results
The measurement of concentrations of drugs and endogenous substances is widely used in basic and clinical pharmacology research and service tasks. Using data science‐derived visualizations of laboratory data, it is demonstrated on a real‐life example that basic statistical exploration of laboratory...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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John Wiley and Sons Inc.
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723702/ https://www.ncbi.nlm.nih.gov/pubmed/29226627 http://dx.doi.org/10.1002/prp2.369 |
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author | Lötsch, Jörn |
author_facet | Lötsch, Jörn |
author_sort | Lötsch, Jörn |
collection | PubMed |
description | The measurement of concentrations of drugs and endogenous substances is widely used in basic and clinical pharmacology research and service tasks. Using data science‐derived visualizations of laboratory data, it is demonstrated on a real‐life example that basic statistical exploration of laboratory assay results or advised standard visual methods of data inspection may fall short in detecting systematic laboratory errors. For example, data pathologies such as generating always the same value in all probes of a particular assay run may pass undetected when using standard methods of data quality check. It is shown that the use of different data visualizations that emphasize different views of the data may enhance the detection of systematic laboratory errors. A dotplot of single data in the order of assay is proposed that provides an overview on the data range, outliers and a particular type of systematic errors where similar values are wrongly measured in all probes. |
format | Online Article Text |
id | pubmed-5723702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-57237022017-12-13 Data visualizations to detect systematic errors in laboratory assay results Lötsch, Jörn Pharmacol Res Perspect Original Articles The measurement of concentrations of drugs and endogenous substances is widely used in basic and clinical pharmacology research and service tasks. Using data science‐derived visualizations of laboratory data, it is demonstrated on a real‐life example that basic statistical exploration of laboratory assay results or advised standard visual methods of data inspection may fall short in detecting systematic laboratory errors. For example, data pathologies such as generating always the same value in all probes of a particular assay run may pass undetected when using standard methods of data quality check. It is shown that the use of different data visualizations that emphasize different views of the data may enhance the detection of systematic laboratory errors. A dotplot of single data in the order of assay is proposed that provides an overview on the data range, outliers and a particular type of systematic errors where similar values are wrongly measured in all probes. John Wiley and Sons Inc. 2017-11-21 /pmc/articles/PMC5723702/ /pubmed/29226627 http://dx.doi.org/10.1002/prp2.369 Text en © 2017 The Authors. Pharmacology Research & Perspectives published by John Wiley & Sons Ltd, British Pharmacological Society and American Society for Pharmacology and Experimental Therapeutics. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Articles Lötsch, Jörn Data visualizations to detect systematic errors in laboratory assay results |
title | Data visualizations to detect systematic errors in laboratory assay results |
title_full | Data visualizations to detect systematic errors in laboratory assay results |
title_fullStr | Data visualizations to detect systematic errors in laboratory assay results |
title_full_unstemmed | Data visualizations to detect systematic errors in laboratory assay results |
title_short | Data visualizations to detect systematic errors in laboratory assay results |
title_sort | data visualizations to detect systematic errors in laboratory assay results |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723702/ https://www.ncbi.nlm.nih.gov/pubmed/29226627 http://dx.doi.org/10.1002/prp2.369 |
work_keys_str_mv | AT lotschjorn datavisualizationstodetectsystematicerrorsinlaboratoryassayresults |