Cargando…
A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148
The discovery of novel and robust enzymes for the breakdown of plant biomass bears tremendous potential for the development of sustainable production processes in the rapidly evolving new bioeconomy. By functional screening of a metagenomic library from a volcano soil sample a novel thermostable end...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5725463/ https://www.ncbi.nlm.nih.gov/pubmed/29229913 http://dx.doi.org/10.1038/s41598-017-16839-8 |
_version_ | 1783285528501682176 |
---|---|
author | Angelov, Angel Pham, Vu Thuy Trang Übelacker, Maria Brady, Silja Leis, Benedikt Pill, Nicole Brolle, Judith Mechelke, Matthias Moerch, Matthias Henrissat, Bernard Liebl, Wolfgang |
author_facet | Angelov, Angel Pham, Vu Thuy Trang Übelacker, Maria Brady, Silja Leis, Benedikt Pill, Nicole Brolle, Judith Mechelke, Matthias Moerch, Matthias Henrissat, Bernard Liebl, Wolfgang |
author_sort | Angelov, Angel |
collection | PubMed |
description | The discovery of novel and robust enzymes for the breakdown of plant biomass bears tremendous potential for the development of sustainable production processes in the rapidly evolving new bioeconomy. By functional screening of a metagenomic library from a volcano soil sample a novel thermostable endo-β-glucanase (EngU) which is unusual with regard to its module architecture and cleavage specificity was identified. Various recombinant EngU variants were characterized. Assignment of EngU to an existing glycoside hydrolase (GH) family was not possible. Two regions of EngU showed weak sequence similarity to proteins of the GH clan GH-A, and acidic residues crucial for catalytic activity of EngU were identified by mutation. Unusual, a carbohydrate-binding module (CBM4) which displayed binding affinity for β-glucan, lichenin and carboxymethyl-cellulose was found as an insertion between these two regions. EngU hydrolyzed β-1,4 linkages in carboxymethyl-cellulose, but displayed its highest activity with mixed linkage (β-1,3-/β-1,4-) glucans such as barley β-glucan and lichenin, where in contrast to characterized lichenases cleavage occurred predominantly at the β-1,3 linkages of C4-substituted glucose residues. EngU and numerous related enzymes with previously unknown function represent a new GH family of biomass-degrading enzymes within the GH-A clan. The name assigned to the new GH family is GH148. |
format | Online Article Text |
id | pubmed-5725463 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57254632017-12-13 A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148 Angelov, Angel Pham, Vu Thuy Trang Übelacker, Maria Brady, Silja Leis, Benedikt Pill, Nicole Brolle, Judith Mechelke, Matthias Moerch, Matthias Henrissat, Bernard Liebl, Wolfgang Sci Rep Article The discovery of novel and robust enzymes for the breakdown of plant biomass bears tremendous potential for the development of sustainable production processes in the rapidly evolving new bioeconomy. By functional screening of a metagenomic library from a volcano soil sample a novel thermostable endo-β-glucanase (EngU) which is unusual with regard to its module architecture and cleavage specificity was identified. Various recombinant EngU variants were characterized. Assignment of EngU to an existing glycoside hydrolase (GH) family was not possible. Two regions of EngU showed weak sequence similarity to proteins of the GH clan GH-A, and acidic residues crucial for catalytic activity of EngU were identified by mutation. Unusual, a carbohydrate-binding module (CBM4) which displayed binding affinity for β-glucan, lichenin and carboxymethyl-cellulose was found as an insertion between these two regions. EngU hydrolyzed β-1,4 linkages in carboxymethyl-cellulose, but displayed its highest activity with mixed linkage (β-1,3-/β-1,4-) glucans such as barley β-glucan and lichenin, where in contrast to characterized lichenases cleavage occurred predominantly at the β-1,3 linkages of C4-substituted glucose residues. EngU and numerous related enzymes with previously unknown function represent a new GH family of biomass-degrading enzymes within the GH-A clan. The name assigned to the new GH family is GH148. Nature Publishing Group UK 2017-12-11 /pmc/articles/PMC5725463/ /pubmed/29229913 http://dx.doi.org/10.1038/s41598-017-16839-8 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Angelov, Angel Pham, Vu Thuy Trang Übelacker, Maria Brady, Silja Leis, Benedikt Pill, Nicole Brolle, Judith Mechelke, Matthias Moerch, Matthias Henrissat, Bernard Liebl, Wolfgang A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148 |
title | A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148 |
title_full | A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148 |
title_fullStr | A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148 |
title_full_unstemmed | A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148 |
title_short | A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148 |
title_sort | metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family gh148 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5725463/ https://www.ncbi.nlm.nih.gov/pubmed/29229913 http://dx.doi.org/10.1038/s41598-017-16839-8 |
work_keys_str_mv | AT angelovangel ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT phamvuthuytrang ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT ubelackermaria ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT bradysilja ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT leisbenedikt ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT pillnicole ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT brollejudith ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT mechelkematthias ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT moerchmatthias ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT henrissatbernard ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT lieblwolfgang ametagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT angelovangel metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT phamvuthuytrang metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT ubelackermaria metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT bradysilja metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT leisbenedikt metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT pillnicole metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT brollejudith metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT mechelkematthias metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT moerchmatthias metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT henrissatbernard metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 AT lieblwolfgang metagenomederivedthermostablebglucanasewithanunusualmodulearchitecturewhichdefinesthenewglycosidehydrolasefamilygh148 |