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How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data
Next-generation sequencing of immunoglobulin gene repertoires (Ig-seq) allows the investigation of large-scale antibody dynamics at a sequence level. However, structural information, a crucial descriptor of antibody binding capability, is not collected in Ig-seq protocols. Developing systematic rela...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727015/ https://www.ncbi.nlm.nih.gov/pubmed/29276518 http://dx.doi.org/10.3389/fimmu.2017.01753 |
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author | Kovaltsuk, Aleksandr Krawczyk, Konrad Galson, Jacob D. Kelly, Dominic F. Deane, Charlotte M. Trück, Johannes |
author_facet | Kovaltsuk, Aleksandr Krawczyk, Konrad Galson, Jacob D. Kelly, Dominic F. Deane, Charlotte M. Trück, Johannes |
author_sort | Kovaltsuk, Aleksandr |
collection | PubMed |
description | Next-generation sequencing of immunoglobulin gene repertoires (Ig-seq) allows the investigation of large-scale antibody dynamics at a sequence level. However, structural information, a crucial descriptor of antibody binding capability, is not collected in Ig-seq protocols. Developing systematic relationships between the antibody sequence information gathered from Ig-seq and low-throughput techniques such as X-ray crystallography could radically improve our understanding of antibodies. The mapping of Ig-seq datasets to known antibody structures can indicate structurally, and perhaps functionally, uncharted areas. Furthermore, contrasting naïve and antigenically challenged datasets using structural antibody descriptors should provide insights into antibody maturation. As the number of antibody structures steadily increases and more and more Ig-seq datasets become available, the opportunities that arise from combining the two types of information increase as well. Here, we review how these data types enrich one another and show potential for advancing our knowledge of the immune system and improving antibody engineering. |
format | Online Article Text |
id | pubmed-5727015 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-57270152017-12-22 How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data Kovaltsuk, Aleksandr Krawczyk, Konrad Galson, Jacob D. Kelly, Dominic F. Deane, Charlotte M. Trück, Johannes Front Immunol Immunology Next-generation sequencing of immunoglobulin gene repertoires (Ig-seq) allows the investigation of large-scale antibody dynamics at a sequence level. However, structural information, a crucial descriptor of antibody binding capability, is not collected in Ig-seq protocols. Developing systematic relationships between the antibody sequence information gathered from Ig-seq and low-throughput techniques such as X-ray crystallography could radically improve our understanding of antibodies. The mapping of Ig-seq datasets to known antibody structures can indicate structurally, and perhaps functionally, uncharted areas. Furthermore, contrasting naïve and antigenically challenged datasets using structural antibody descriptors should provide insights into antibody maturation. As the number of antibody structures steadily increases and more and more Ig-seq datasets become available, the opportunities that arise from combining the two types of information increase as well. Here, we review how these data types enrich one another and show potential for advancing our knowledge of the immune system and improving antibody engineering. Frontiers Media S.A. 2017-12-08 /pmc/articles/PMC5727015/ /pubmed/29276518 http://dx.doi.org/10.3389/fimmu.2017.01753 Text en Copyright © 2017 Kovaltsuk, Krawczyk, Galson, Kelly, Deane and Trück. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Kovaltsuk, Aleksandr Krawczyk, Konrad Galson, Jacob D. Kelly, Dominic F. Deane, Charlotte M. Trück, Johannes How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data |
title | How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data |
title_full | How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data |
title_fullStr | How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data |
title_full_unstemmed | How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data |
title_short | How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data |
title_sort | how b-cell receptor repertoire sequencing can be enriched with structural antibody data |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727015/ https://www.ncbi.nlm.nih.gov/pubmed/29276518 http://dx.doi.org/10.3389/fimmu.2017.01753 |
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