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Structure of outer membrane protein G in lipid bilayers

β-barrel proteins mediate nutrient uptake in bacteria and serve vital functions in cell signaling and adhesion. For the 14-strand outer membrane protein G of Escherichia coli, opening and closing is pH-dependent. Different roles of the extracellular loops in this process were proposed, and X-ray and...

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Autores principales: Retel, Joren S., Nieuwkoop, Andrew J., Hiller, Matthias, Higman, Victoria A., Barbet-Massin, Emeline, Stanek, Jan, Andreas, Loren B., Franks, W. Trent, van Rossum, Barth-Jan, Vinothkumar, Kutti R., Handel, Lieselotte, de Palma, Gregorio Giuseppe, Bardiaux, Benjamin, Pintacuda, Guido, Emsley, Lyndon, Kühlbrandt, Werner, Oschkinat, Hartmut
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727033/
https://www.ncbi.nlm.nih.gov/pubmed/29233991
http://dx.doi.org/10.1038/s41467-017-02228-2
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author Retel, Joren S.
Nieuwkoop, Andrew J.
Hiller, Matthias
Higman, Victoria A.
Barbet-Massin, Emeline
Stanek, Jan
Andreas, Loren B.
Franks, W. Trent
van Rossum, Barth-Jan
Vinothkumar, Kutti R.
Handel, Lieselotte
de Palma, Gregorio Giuseppe
Bardiaux, Benjamin
Pintacuda, Guido
Emsley, Lyndon
Kühlbrandt, Werner
Oschkinat, Hartmut
author_facet Retel, Joren S.
Nieuwkoop, Andrew J.
Hiller, Matthias
Higman, Victoria A.
Barbet-Massin, Emeline
Stanek, Jan
Andreas, Loren B.
Franks, W. Trent
van Rossum, Barth-Jan
Vinothkumar, Kutti R.
Handel, Lieselotte
de Palma, Gregorio Giuseppe
Bardiaux, Benjamin
Pintacuda, Guido
Emsley, Lyndon
Kühlbrandt, Werner
Oschkinat, Hartmut
author_sort Retel, Joren S.
collection PubMed
description β-barrel proteins mediate nutrient uptake in bacteria and serve vital functions in cell signaling and adhesion. For the 14-strand outer membrane protein G of Escherichia coli, opening and closing is pH-dependent. Different roles of the extracellular loops in this process were proposed, and X-ray and solution NMR studies were divergent. Here, we report the structure of outer membrane protein G investigated in bilayers of E. coli lipid extracts by magic-angle-spinning NMR. In total, 1847 inter-residue (1)H–(1)H and (13)C–(13)C distance restraints, 256 torsion angles, but no hydrogen bond restraints are used to calculate the structure. The length of β-strands is found to vary beyond the membrane boundary, with strands 6–8 being the longest and the extracellular loops 3 and 4 well ordered. The site of barrel closure at strands 1 and 14 is more disordered than most remaining strands, with the flexibility decreasing toward loops 3 and 4. Loop 4 presents a well-defined helix.
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spelling pubmed-57270332017-12-14 Structure of outer membrane protein G in lipid bilayers Retel, Joren S. Nieuwkoop, Andrew J. Hiller, Matthias Higman, Victoria A. Barbet-Massin, Emeline Stanek, Jan Andreas, Loren B. Franks, W. Trent van Rossum, Barth-Jan Vinothkumar, Kutti R. Handel, Lieselotte de Palma, Gregorio Giuseppe Bardiaux, Benjamin Pintacuda, Guido Emsley, Lyndon Kühlbrandt, Werner Oschkinat, Hartmut Nat Commun Article β-barrel proteins mediate nutrient uptake in bacteria and serve vital functions in cell signaling and adhesion. For the 14-strand outer membrane protein G of Escherichia coli, opening and closing is pH-dependent. Different roles of the extracellular loops in this process were proposed, and X-ray and solution NMR studies were divergent. Here, we report the structure of outer membrane protein G investigated in bilayers of E. coli lipid extracts by magic-angle-spinning NMR. In total, 1847 inter-residue (1)H–(1)H and (13)C–(13)C distance restraints, 256 torsion angles, but no hydrogen bond restraints are used to calculate the structure. The length of β-strands is found to vary beyond the membrane boundary, with strands 6–8 being the longest and the extracellular loops 3 and 4 well ordered. The site of barrel closure at strands 1 and 14 is more disordered than most remaining strands, with the flexibility decreasing toward loops 3 and 4. Loop 4 presents a well-defined helix. Nature Publishing Group UK 2017-12-12 /pmc/articles/PMC5727033/ /pubmed/29233991 http://dx.doi.org/10.1038/s41467-017-02228-2 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Retel, Joren S.
Nieuwkoop, Andrew J.
Hiller, Matthias
Higman, Victoria A.
Barbet-Massin, Emeline
Stanek, Jan
Andreas, Loren B.
Franks, W. Trent
van Rossum, Barth-Jan
Vinothkumar, Kutti R.
Handel, Lieselotte
de Palma, Gregorio Giuseppe
Bardiaux, Benjamin
Pintacuda, Guido
Emsley, Lyndon
Kühlbrandt, Werner
Oschkinat, Hartmut
Structure of outer membrane protein G in lipid bilayers
title Structure of outer membrane protein G in lipid bilayers
title_full Structure of outer membrane protein G in lipid bilayers
title_fullStr Structure of outer membrane protein G in lipid bilayers
title_full_unstemmed Structure of outer membrane protein G in lipid bilayers
title_short Structure of outer membrane protein G in lipid bilayers
title_sort structure of outer membrane protein g in lipid bilayers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727033/
https://www.ncbi.nlm.nih.gov/pubmed/29233991
http://dx.doi.org/10.1038/s41467-017-02228-2
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