Cargando…

An Exhaustive Search Algorithm to Aid NMR-Based Structure Determination of Rotationally Symmetric Transmembrane Oligomers

Nuclear magnetic resonance (NMR) has been an important source of structural restraints for solving structures of oligomeric transmembrane domains (TMDs) of cell surface receptors and viral membrane proteins. In NMR studies, oligomers are assembled using inter-protomer distance restraints. But, for o...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yang, Jing, Piai, Alessandro, Shen, Hong-Bin, Chou, James J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727114/ https://www.ncbi.nlm.nih.gov/pubmed/29234103 http://dx.doi.org/10.1038/s41598-017-17639-w

Ejemplares similares

PELDOR in rotationally symmetric homo-oligomers
por: Giannoulis, Angeliki, et al.
Publicado: (2013)

Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings
por: Sgourakis, Nikolaos G., et al.
Publicado: (2011)

The Diversity and Similarity of Transmembrane Trimerization of TNF Receptors
por: Zhao, Linlin, et al.
Publicado: (2020)

The Transmembrane Oligomers of Coronavirus Protein E
por: Torres, Jaume, et al.
Publicado: (2005)

On-Pathway Oligomer of Human Islet Amyloid Polypeptide Induced and Stabilized by Mechanical Rotation During MAS NMR
por: McCalpin, Samuel D., et al.
Publicado: (2023)

Kmer-SSR: a fast and exhaustive SSR search algorithm
por: Pickett, Brandon D, et al.
Publicado: (2017)

Site specific NMR characterization of abeta-40 oligomers cross seeded by abeta-42 oligomers
por: Chang, Han-Wen, et al.
Publicado: (2022)

The near-symmetry of protein oligomers: NMR-derived structures
por: Bonjack, Maayan, et al.
Publicado: (2020)

Structural basis of transmembrane coupling of the HIV-1 envelope glycoprotein
por: Piai, Alessandro, et al.
Publicado: (2020)

Rearrangement of the transmembrane domain interfaces associated with the activation of a GPCR hetero-oligomer
por: Xue, Li, et al.
Publicado: (2019)

The symmetric group: representations, combinatorial algorithms, and symmetric functions
por: Sagan, Bruce E
Publicado: (2001)

NMR pseudocontact shifts in a symmetric protein homotrimer
por: Müntener, Thomas, et al.
Publicado: (2020)

Structure determination of the seven-helical transmembrane receptor sensory rhodopsin II by solution NMR spectroscopy
por: Gautier, Antoine, et al.
Publicado: (2010)

An exhaustive review of the metaheuristic algorithms for search and optimization: taxonomy, applications, and open challenges
por: Rajwar, Kanchan, et al.
Publicado: (2023)

Multiquantum Chemical Exchange Saturation Transfer NMR to Quantify Symmetrical Exchange: Application to Rotational Dynamics of the Guanidinium Group in Arginine Side Chains
por: Karunanithy, Gogulan, et al.
Publicado: (2020)

Fully Symmetric Cyclodextrin Polycarboxylates: How to Determine Reliable Protonation Constants from NMR Titration Data
por: Kalydi, Eszter, et al.
Publicado: (2022)

Gene regulatory networks inference using a multi-GPU exhaustive search algorithm
por: Borelli, Fabrizio F, et al.
Publicado: (2013)

The transverse motion of rotationally symmetric charged particle beams
por: Davies, A J
Publicado: (1970)

Problems of reducing the exhaustive search
por: Kreinovich, V, et al.
Publicado: (1996)

Frequent and symmetric deposition of misfolded tau oligomers within presynaptic and postsynaptic terminals in Alzheimer’s disease
por: Tai, Hwan-Ching, et al.
Publicado: (2014)

Design and development of stapled transmembrane peptides that disrupt the activity of G-protein–coupled receptor oligomers
por: Botta, Joaquín, et al.
Publicado: (2019)

A symmetric geometry of transmembrane domains inside the B cell antigen receptor complex
por: Gottwick, Cornelia, et al.
Publicado: (2019)

Linac Design Algorithm with Symmetric Segments
por: Takeda, H, et al.
Publicado: (1996)

Structural Model of the Bilitranslocase Transmembrane Domain Supported by NMR and FRET Data
por: Choudhury, Amrita Roy, et al.
Publicado: (2015)

Femtosecond Laser-Based Micromachining of Rotational-Symmetric Sapphire Workpieces
por: Kefer, Stefan, et al.
Publicado: (2022)

Prion Protein-mediated Toxicity of Amyloid-β Oligomers Requires Lipid Rafts and the Transmembrane LRP1
por: Rushworth, Jo V., et al.
Publicado: (2013)

Structure determination of UL49.5 transmembrane protein from bovine herpesvirus 1 by NMR spectroscopy and molecular dynamics
por: Karska, Natalia, et al.
Publicado: (2019)

High-resolution NMR characterization of low abundance oligomers of amyloid-β without purification
por: Kotler, Samuel A., et al.
Publicado: (2015)

Molecular mechanisms of amyloid-β peptide fibril and oligomer formation: NMR-based challenges
por: Hiroaki, Hidekazu
Publicado: (2023)

Glycines from the APP GXXXG/GXXXA Transmembrane Motifs Promote Formation of Pathogenic Aβ Oligomers in Cells
por: Decock, Marie, et al.
Publicado: (2016)

Determining rotational dynamics of the guanidino group of arginine side chains in proteins by carbon-detected NMR
por: Gerecht, Karola, et al.
Publicado: (2017)

Mechanochemical synthesis of glycine oligomers in a virtual rotational diamond anvil cell
por: Steele, Brad A., et al.
Publicado: (2020)

Search for SUperSYmmetric particles at LEP2
por: Cerutti, F
Publicado: (1998)

Computing locating-total domination number in some rotationally symmetric graphs
por: Raza, Hassan, et al.
Publicado: (2021)

Stable-Isotope-Aided NMR Spectroscopy
por: Miyanoiri, Yohei, et al.
Publicado: (2018)

EGNAS: an exhaustive DNA sequence design algorithm
por: Kick, Alfred, et al.
Publicado: (2012)

Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices
por: Lai, Jhih-Siang, et al.
Publicado: (2013)

Protein–Protein Connections—Oligomer, Amyloid and Protein Complex—By Wide Line (1)H NMR
por: Bokor, Mónika, et al.
Publicado: (2021)

Exhaustive search for epistatic effects on the human methylome
por: Egli, Tobias, et al.
Publicado: (2017)

Security Analysis of Image Encryption Based on Gyrator Transform by Searching the Rotation Angle with Improved PSO Algorithm
por: Sang, Jun, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_p0hcfsh5ne4duit7t6k5tdjtav