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Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans

This paper focusses on the simulation of the neural network of the Caenorhabditis elegans living organism, and more specifically in the modeling of the stimuli applied within behavioral experiments and the stimuli that is generated in the interaction of the C. elegans with the environment. To the be...

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Autores principales: Mujika, Andoni, Leškovský, Peter, Álvarez, Roberto, Otaduy, Miguel A., Epelde, Gorka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727351/
https://www.ncbi.nlm.nih.gov/pubmed/29276485
http://dx.doi.org/10.3389/fninf.2017.00071
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author Mujika, Andoni
Leškovský, Peter
Álvarez, Roberto
Otaduy, Miguel A.
Epelde, Gorka
author_facet Mujika, Andoni
Leškovský, Peter
Álvarez, Roberto
Otaduy, Miguel A.
Epelde, Gorka
author_sort Mujika, Andoni
collection PubMed
description This paper focusses on the simulation of the neural network of the Caenorhabditis elegans living organism, and more specifically in the modeling of the stimuli applied within behavioral experiments and the stimuli that is generated in the interaction of the C. elegans with the environment. To the best of our knowledge, all efforts regarding stimuli modeling for the C. elegansare focused on a single type of stimulus, which is usually tested with a limited subnetwork of the C. elegansneural system. In this paper, we follow a different approach where we model a wide-range of different stimuli, with more flexible neural network configurations and simulations in mind. Moreover, we focus on the stimuli sensation by different types of sensory organs or various sensory principles of the neurons. As part of this work, most common stimuli involved in behavioral assays have been modeled. It includes models for mechanical, thermal, chemical, electrical and light stimuli, and for proprioception-related self-sensed information exchange with the neural network. The developed models have been implemented and tested with the hardware-based Si elegans simulation platform.
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spelling pubmed-57273512017-12-22 Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans Mujika, Andoni Leškovský, Peter Álvarez, Roberto Otaduy, Miguel A. Epelde, Gorka Front Neuroinform Neuroscience This paper focusses on the simulation of the neural network of the Caenorhabditis elegans living organism, and more specifically in the modeling of the stimuli applied within behavioral experiments and the stimuli that is generated in the interaction of the C. elegans with the environment. To the best of our knowledge, all efforts regarding stimuli modeling for the C. elegansare focused on a single type of stimulus, which is usually tested with a limited subnetwork of the C. elegansneural system. In this paper, we follow a different approach where we model a wide-range of different stimuli, with more flexible neural network configurations and simulations in mind. Moreover, we focus on the stimuli sensation by different types of sensory organs or various sensory principles of the neurons. As part of this work, most common stimuli involved in behavioral assays have been modeled. It includes models for mechanical, thermal, chemical, electrical and light stimuli, and for proprioception-related self-sensed information exchange with the neural network. The developed models have been implemented and tested with the hardware-based Si elegans simulation platform. Frontiers Media S.A. 2017-12-08 /pmc/articles/PMC5727351/ /pubmed/29276485 http://dx.doi.org/10.3389/fninf.2017.00071 Text en Copyright © 2017 Mujika, Leškovský, Álvarez, Otaduy and Epelde. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Mujika, Andoni
Leškovský, Peter
Álvarez, Roberto
Otaduy, Miguel A.
Epelde, Gorka
Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans
title Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans
title_full Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans
title_fullStr Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans
title_full_unstemmed Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans
title_short Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans
title_sort modeling behavioral experiment interaction and environmental stimuli for a synthetic c. elegans
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727351/
https://www.ncbi.nlm.nih.gov/pubmed/29276485
http://dx.doi.org/10.3389/fninf.2017.00071
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