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Genetic drift and selection in many-allele range expansions
We experimentally and numerically investigate the evolutionary dynamics of four competing strains of E. coli with differing expansion velocities in radially expanding colonies. We compare experimental measurements of the average fraction, correlation functions between strains, and the relative rates...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5728587/ https://www.ncbi.nlm.nih.gov/pubmed/29194439 http://dx.doi.org/10.1371/journal.pcbi.1005866 |
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author | Weinstein, Bryan T. Lavrentovich, Maxim O. Möbius, Wolfram Murray, Andrew W. Nelson, David R. |
author_facet | Weinstein, Bryan T. Lavrentovich, Maxim O. Möbius, Wolfram Murray, Andrew W. Nelson, David R. |
author_sort | Weinstein, Bryan T. |
collection | PubMed |
description | We experimentally and numerically investigate the evolutionary dynamics of four competing strains of E. coli with differing expansion velocities in radially expanding colonies. We compare experimental measurements of the average fraction, correlation functions between strains, and the relative rates of genetic domain wall annihilations and coalescences to simulations modeling the population as a one-dimensional ring of annihilating and coalescing random walkers with deterministic biases due to selection. The simulations reveal that the evolutionary dynamics can be collapsed onto master curves governed by three essential parameters: (1) an expansion length beyond which selection dominates over genetic drift; (2) a characteristic angular correlation describing the size of genetic domains; and (3) a dimensionless constant quantifying the interplay between a colony’s curvature at the frontier and its selection length scale. We measure these parameters with a new technique that precisely measures small selective differences between spatially competing strains and show that our simulations accurately predict the dynamics without additional fitting. Our results suggest that the random walk model can act as a useful predictive tool for describing the evolutionary dynamics of range expansions composed of an arbitrary number of genotypes with different fitnesses. |
format | Online Article Text |
id | pubmed-5728587 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-57285872017-12-22 Genetic drift and selection in many-allele range expansions Weinstein, Bryan T. Lavrentovich, Maxim O. Möbius, Wolfram Murray, Andrew W. Nelson, David R. PLoS Comput Biol Research Article We experimentally and numerically investigate the evolutionary dynamics of four competing strains of E. coli with differing expansion velocities in radially expanding colonies. We compare experimental measurements of the average fraction, correlation functions between strains, and the relative rates of genetic domain wall annihilations and coalescences to simulations modeling the population as a one-dimensional ring of annihilating and coalescing random walkers with deterministic biases due to selection. The simulations reveal that the evolutionary dynamics can be collapsed onto master curves governed by three essential parameters: (1) an expansion length beyond which selection dominates over genetic drift; (2) a characteristic angular correlation describing the size of genetic domains; and (3) a dimensionless constant quantifying the interplay between a colony’s curvature at the frontier and its selection length scale. We measure these parameters with a new technique that precisely measures small selective differences between spatially competing strains and show that our simulations accurately predict the dynamics without additional fitting. Our results suggest that the random walk model can act as a useful predictive tool for describing the evolutionary dynamics of range expansions composed of an arbitrary number of genotypes with different fitnesses. Public Library of Science 2017-12-01 /pmc/articles/PMC5728587/ /pubmed/29194439 http://dx.doi.org/10.1371/journal.pcbi.1005866 Text en © 2017 Weinstein et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Weinstein, Bryan T. Lavrentovich, Maxim O. Möbius, Wolfram Murray, Andrew W. Nelson, David R. Genetic drift and selection in many-allele range expansions |
title | Genetic drift and selection in many-allele range expansions |
title_full | Genetic drift and selection in many-allele range expansions |
title_fullStr | Genetic drift and selection in many-allele range expansions |
title_full_unstemmed | Genetic drift and selection in many-allele range expansions |
title_short | Genetic drift and selection in many-allele range expansions |
title_sort | genetic drift and selection in many-allele range expansions |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5728587/ https://www.ncbi.nlm.nih.gov/pubmed/29194439 http://dx.doi.org/10.1371/journal.pcbi.1005866 |
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