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Disentangling diatom species complexes: does morphometry suffice?

Accurate taxonomic resolution in light microscopy analyses of microalgae is essential to achieve high quality, comparable results in both floristic analyses and biomonitoring studies. A number of closely related diatom taxa have been detected to date co-occurring within benthic diatom assemblages, s...

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Detalles Bibliográficos
Autores principales: Blanco, Saúl, Borrego-Ramos, María, Olenici, Adriana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5729831/
https://www.ncbi.nlm.nih.gov/pubmed/29250472
http://dx.doi.org/10.7717/peerj.4159
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author Blanco, Saúl
Borrego-Ramos, María
Olenici, Adriana
author_facet Blanco, Saúl
Borrego-Ramos, María
Olenici, Adriana
author_sort Blanco, Saúl
collection PubMed
description Accurate taxonomic resolution in light microscopy analyses of microalgae is essential to achieve high quality, comparable results in both floristic analyses and biomonitoring studies. A number of closely related diatom taxa have been detected to date co-occurring within benthic diatom assemblages, sharing many morphological, morphometrical and ecological characteristics. In this contribution, we analysed the hypothesis that, where a large sample size (number of individuals) is available, common morphometrical parameters (valve length, width and stria density) are sufficient to achieve a correct identification to the species level. We focused on some common diatom taxa belonging to the genus Gomphonema. More than 400 valves and frustules were photographed in valve view and measured using Fiji software. Several statistical tools (mixture and discriminant analysis, k-means clustering, classification trees, etc.) were explored to test whether mere morphometry, independently of other valve features, leads to correct identifications, when compared to identifications made by experts. In view of the results obtained, morphometry-based determination in diatom taxonomy is discouraged.
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spelling pubmed-57298312017-12-15 Disentangling diatom species complexes: does morphometry suffice? Blanco, Saúl Borrego-Ramos, María Olenici, Adriana PeerJ Bioinformatics Accurate taxonomic resolution in light microscopy analyses of microalgae is essential to achieve high quality, comparable results in both floristic analyses and biomonitoring studies. A number of closely related diatom taxa have been detected to date co-occurring within benthic diatom assemblages, sharing many morphological, morphometrical and ecological characteristics. In this contribution, we analysed the hypothesis that, where a large sample size (number of individuals) is available, common morphometrical parameters (valve length, width and stria density) are sufficient to achieve a correct identification to the species level. We focused on some common diatom taxa belonging to the genus Gomphonema. More than 400 valves and frustules were photographed in valve view and measured using Fiji software. Several statistical tools (mixture and discriminant analysis, k-means clustering, classification trees, etc.) were explored to test whether mere morphometry, independently of other valve features, leads to correct identifications, when compared to identifications made by experts. In view of the results obtained, morphometry-based determination in diatom taxonomy is discouraged. PeerJ Inc. 2017-12-11 /pmc/articles/PMC5729831/ /pubmed/29250472 http://dx.doi.org/10.7717/peerj.4159 Text en ©2017 Blanco et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Blanco, Saúl
Borrego-Ramos, María
Olenici, Adriana
Disentangling diatom species complexes: does morphometry suffice?
title Disentangling diatom species complexes: does morphometry suffice?
title_full Disentangling diatom species complexes: does morphometry suffice?
title_fullStr Disentangling diatom species complexes: does morphometry suffice?
title_full_unstemmed Disentangling diatom species complexes: does morphometry suffice?
title_short Disentangling diatom species complexes: does morphometry suffice?
title_sort disentangling diatom species complexes: does morphometry suffice?
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5729831/
https://www.ncbi.nlm.nih.gov/pubmed/29250472
http://dx.doi.org/10.7717/peerj.4159
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