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Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species
BACKGROUND: Drought is a lifestyle disease. Plant metabolomics has been exercised for understanding the fine-tuning of the potential pathways to surmount the adverse effects of drought stress. A broad spectrum of morphological and metabolic responses from seven Triticeae species including wild types...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731210/ https://www.ncbi.nlm.nih.gov/pubmed/29246190 http://dx.doi.org/10.1186/s12864-017-4321-2 |
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author | Ullah, Naimat Yüce, Meral Neslihan Öztürk Gökçe, Z. Budak, Hikmet |
author_facet | Ullah, Naimat Yüce, Meral Neslihan Öztürk Gökçe, Z. Budak, Hikmet |
author_sort | Ullah, Naimat |
collection | PubMed |
description | BACKGROUND: Drought is a lifestyle disease. Plant metabolomics has been exercised for understanding the fine-tuning of the potential pathways to surmount the adverse effects of drought stress. A broad spectrum of morphological and metabolic responses from seven Triticeae species including wild types with different drought tolerance/susceptibility level was investigated under control and water scarcity conditions. RESULTS: Significant morphological parameters measured were root length, surface area, average root diameter and overall root development. Principal Component Analysis, Partial Least-Squares-Discriminant Analysis and Hierarchical Cluster Analysis were applied to the metabolomic data obtained by Gas Chromatography-Mass Spectrometry technique in order to determine the important metabolites of the drought tolerance across seven different Triticeae species. The metabolites showing significant accumulation under the drought stress were considered as the key metabolites and correlated with potential biochemical pathways, enzymes or gene locations for a better understanding of the tolerance mechanisms. In all tested species, 45 significantly active metabolites with possible roles in drought stress were identified. Twenty-one metabolites out of forty-five including sugars, amino acids, organic acids and low molecular weight compounds increased in both leaf and root samples of TR39477, IG132864 and Bolal under the drought stress, contrasting to TTD-22, Tosunbey, Ligustica and Meyeri samples. Three metabolites including succinate, aspartate and trehalose were selected for further genome analysis due to their increased levels in TR39477, IG132864, and Bolal upon drought stress treatment as well as their significant role in energy producing biochemical pathways. CONCLUSION: These results demonstrated that the genotypes with high drought tolerance skills, especially wild emmer wheat, have a great potential to be a genetic model system for experiments aiming to validate metabolomics–genomics networks. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-017-4321-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5731210 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57312102017-12-19 Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species Ullah, Naimat Yüce, Meral Neslihan Öztürk Gökçe, Z. Budak, Hikmet BMC Genomics Research Article BACKGROUND: Drought is a lifestyle disease. Plant metabolomics has been exercised for understanding the fine-tuning of the potential pathways to surmount the adverse effects of drought stress. A broad spectrum of morphological and metabolic responses from seven Triticeae species including wild types with different drought tolerance/susceptibility level was investigated under control and water scarcity conditions. RESULTS: Significant morphological parameters measured were root length, surface area, average root diameter and overall root development. Principal Component Analysis, Partial Least-Squares-Discriminant Analysis and Hierarchical Cluster Analysis were applied to the metabolomic data obtained by Gas Chromatography-Mass Spectrometry technique in order to determine the important metabolites of the drought tolerance across seven different Triticeae species. The metabolites showing significant accumulation under the drought stress were considered as the key metabolites and correlated with potential biochemical pathways, enzymes or gene locations for a better understanding of the tolerance mechanisms. In all tested species, 45 significantly active metabolites with possible roles in drought stress were identified. Twenty-one metabolites out of forty-five including sugars, amino acids, organic acids and low molecular weight compounds increased in both leaf and root samples of TR39477, IG132864 and Bolal under the drought stress, contrasting to TTD-22, Tosunbey, Ligustica and Meyeri samples. Three metabolites including succinate, aspartate and trehalose were selected for further genome analysis due to their increased levels in TR39477, IG132864, and Bolal upon drought stress treatment as well as their significant role in energy producing biochemical pathways. CONCLUSION: These results demonstrated that the genotypes with high drought tolerance skills, especially wild emmer wheat, have a great potential to be a genetic model system for experiments aiming to validate metabolomics–genomics networks. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-017-4321-2) contains supplementary material, which is available to authorized users. BioMed Central 2017-12-15 /pmc/articles/PMC5731210/ /pubmed/29246190 http://dx.doi.org/10.1186/s12864-017-4321-2 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Ullah, Naimat Yüce, Meral Neslihan Öztürk Gökçe, Z. Budak, Hikmet Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species |
title | Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species |
title_full | Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species |
title_fullStr | Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species |
title_full_unstemmed | Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species |
title_short | Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species |
title_sort | comparative metabolite profiling of drought stress in roots and leaves of seven triticeae species |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731210/ https://www.ncbi.nlm.nih.gov/pubmed/29246190 http://dx.doi.org/10.1186/s12864-017-4321-2 |
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