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Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma
This study analyzed magnetic resonance imaging (MRI) scans of Glioblastoma (GB) patients to develop an imaging-derived predictive model for assessing the extent of intratumoral CD3 T-cell infiltration. Pre-surgical T1-weighted post-contrast and T2-weighted Fluid-Attenuated-Inversion-Recovery (FLAIR)...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731870/ https://www.ncbi.nlm.nih.gov/pubmed/29254160 http://dx.doi.org/10.18632/oncotarget.20643 |
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author | Narang, Shivali Kim, Donnie Aithala, Sathvik Heimberger, Amy B. Ahmed, Salmaan Rao, Dinesh Rao, Ganesh Rao, Arvind |
author_facet | Narang, Shivali Kim, Donnie Aithala, Sathvik Heimberger, Amy B. Ahmed, Salmaan Rao, Dinesh Rao, Ganesh Rao, Arvind |
author_sort | Narang, Shivali |
collection | PubMed |
description | This study analyzed magnetic resonance imaging (MRI) scans of Glioblastoma (GB) patients to develop an imaging-derived predictive model for assessing the extent of intratumoral CD3 T-cell infiltration. Pre-surgical T1-weighted post-contrast and T2-weighted Fluid-Attenuated-Inversion-Recovery (FLAIR) MRI scans, with corresponding mRNA expression of CD3D/E/G were obtained through The Cancer Genome Atlas (TCGA) for 79 GB patients. The tumor region was contoured and 86 image-derived features were extracted across the T1-post contrast and FLAIR images. Six imaging features—kurtosis, contrast, small zone size emphasis, low gray level zone size emphasis, high gray level zone size emphasis, small zone high gray level emphasis—were found associated with CD3 activity and used to build a predictive model for CD3 infiltration in an independent data set of 69 GB patients (using a 50-50 split for training and testing). For the training set, the image-based prediction model for CD3 infiltration achieved accuracy of 97.1% and area under the curve (AUC) of 0.993. For the test set, the model achieved accuracy of 76.5% and AUC of 0.847. This suggests a relationship between image-derived textural features and CD3 T-cell infiltration enabling the non-invasive inference of intratumoral CD3 T-cell infiltration in GB patients, with potential value for the radiological assessment of response to immune therapeutics. |
format | Online Article Text |
id | pubmed-5731870 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-57318702017-12-17 Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma Narang, Shivali Kim, Donnie Aithala, Sathvik Heimberger, Amy B. Ahmed, Salmaan Rao, Dinesh Rao, Ganesh Rao, Arvind Oncotarget Research Paper This study analyzed magnetic resonance imaging (MRI) scans of Glioblastoma (GB) patients to develop an imaging-derived predictive model for assessing the extent of intratumoral CD3 T-cell infiltration. Pre-surgical T1-weighted post-contrast and T2-weighted Fluid-Attenuated-Inversion-Recovery (FLAIR) MRI scans, with corresponding mRNA expression of CD3D/E/G were obtained through The Cancer Genome Atlas (TCGA) for 79 GB patients. The tumor region was contoured and 86 image-derived features were extracted across the T1-post contrast and FLAIR images. Six imaging features—kurtosis, contrast, small zone size emphasis, low gray level zone size emphasis, high gray level zone size emphasis, small zone high gray level emphasis—were found associated with CD3 activity and used to build a predictive model for CD3 infiltration in an independent data set of 69 GB patients (using a 50-50 split for training and testing). For the training set, the image-based prediction model for CD3 infiltration achieved accuracy of 97.1% and area under the curve (AUC) of 0.993. For the test set, the model achieved accuracy of 76.5% and AUC of 0.847. This suggests a relationship between image-derived textural features and CD3 T-cell infiltration enabling the non-invasive inference of intratumoral CD3 T-cell infiltration in GB patients, with potential value for the radiological assessment of response to immune therapeutics. Impact Journals LLC 2017-09-05 /pmc/articles/PMC5731870/ /pubmed/29254160 http://dx.doi.org/10.18632/oncotarget.20643 Text en Copyright: © 2017 Narang et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (http://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Narang, Shivali Kim, Donnie Aithala, Sathvik Heimberger, Amy B. Ahmed, Salmaan Rao, Dinesh Rao, Ganesh Rao, Arvind Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma |
title | Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma |
title_full | Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma |
title_fullStr | Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma |
title_full_unstemmed | Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma |
title_short | Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma |
title_sort | tumor image-derived texture features are associated with cd3 t-cell infiltration status in glioblastoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731870/ https://www.ncbi.nlm.nih.gov/pubmed/29254160 http://dx.doi.org/10.18632/oncotarget.20643 |
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