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Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium
10.1601/nm.26956 caballeronis is a plant-associated bacterium. Strain TNe-841(T) was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an...
| Autores principales: | , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2017
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5732367/ https://www.ncbi.nlm.nih.gov/pubmed/29255574 http://dx.doi.org/10.1186/s40793-017-0294-7 |
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| author | Rojas-Rojas, Fernando Uriel Tapia-García, Erika Yanet Maymon, Maskit Humm, Ethan Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Shapiro, Nicole Hirsch, Ann M. Estrada-de los Santos, Paulina |
| author_facet | Rojas-Rojas, Fernando Uriel Tapia-García, Erika Yanet Maymon, Maskit Humm, Ethan Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Shapiro, Nicole Hirsch, Ann M. Estrada-de los Santos, Paulina |
| author_sort | Rojas-Rojas, Fernando Uriel |
| collection | PubMed |
| description | 10.1601/nm.26956 caballeronis is a plant-associated bacterium. Strain TNe-841(T) was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841(T) and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. |
| format | Online Article Text |
| id | pubmed-5732367 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2017 |
| publisher | BioMed Central |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-57323672017-12-18 Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium Rojas-Rojas, Fernando Uriel Tapia-García, Erika Yanet Maymon, Maskit Humm, Ethan Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Shapiro, Nicole Hirsch, Ann M. Estrada-de los Santos, Paulina Stand Genomic Sci Short Genome Report 10.1601/nm.26956 caballeronis is a plant-associated bacterium. Strain TNe-841(T) was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841(T) and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. BioMed Central 2017-12-16 /pmc/articles/PMC5732367/ /pubmed/29255574 http://dx.doi.org/10.1186/s40793-017-0294-7 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
| spellingShingle | Short Genome Report Rojas-Rojas, Fernando Uriel Tapia-García, Erika Yanet Maymon, Maskit Humm, Ethan Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Shapiro, Nicole Hirsch, Ann M. Estrada-de los Santos, Paulina Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium |
| title | Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium |
| title_full | Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium |
| title_fullStr | Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium |
| title_full_unstemmed | Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium |
| title_short | Draft genome of Paraburkholderia caballeronis TNe-841(T), a free-living, nitrogen-fixing, tomato plant-associated bacterium |
| title_sort | draft genome of paraburkholderia caballeronis tne-841(t), a free-living, nitrogen-fixing, tomato plant-associated bacterium |
| topic | Short Genome Report |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5732367/ https://www.ncbi.nlm.nih.gov/pubmed/29255574 http://dx.doi.org/10.1186/s40793-017-0294-7 |
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