DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy

Circular dichroism spectroscopy is a well‐used, but simple method in structural biology for providing information on the secondary structure and folds of proteins. DichroMatch (DM@PCDDB) is an online tool that is newly available in the Protein Circular Dichroism Data Bank (PCDDB), which takes advant...

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Detalles Bibliográficos
Autores principales: Whitmore, Lee, Mavridis, Lazaros, Wallace, B.A., Janes, Robert W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Tools for Protein Science
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5734389/
https://www.ncbi.nlm.nih.gov/pubmed/28580679
http://dx.doi.org/10.1002/pro.3207
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author Whitmore, Lee
Mavridis, Lazaros
Wallace, B.A.
Janes, Robert W.
author_facet Whitmore, Lee
Mavridis, Lazaros
Wallace, B.A.
Janes, Robert W.
author_sort Whitmore, Lee
collection PubMed
description Circular dichroism spectroscopy is a well‐used, but simple method in structural biology for providing information on the secondary structure and folds of proteins. DichroMatch (DM@PCDDB) is an online tool that is newly available in the Protein Circular Dichroism Data Bank (PCDDB), which takes advantage of the wealth of spectral and metadata deposited therein, to enable identification of spectral nearest neighbors of a query protein based on four different methods of spectral matching. DM@PCDDB can potentially provide novel information about structural relationships between proteins and can be used in comparison studies of protein homologs and orthologs.
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spelling pubmed-57343892017-12-21 DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy Whitmore, Lee Mavridis, Lazaros Wallace, B.A. Janes, Robert W. Protein Sci Tools for Protein Science Circular dichroism spectroscopy is a well‐used, but simple method in structural biology for providing information on the secondary structure and folds of proteins. DichroMatch (DM@PCDDB) is an online tool that is newly available in the Protein Circular Dichroism Data Bank (PCDDB), which takes advantage of the wealth of spectral and metadata deposited therein, to enable identification of spectral nearest neighbors of a query protein based on four different methods of spectral matching. DM@PCDDB can potentially provide novel information about structural relationships between proteins and can be used in comparison studies of protein homologs and orthologs. John Wiley and Sons Inc. 2017-10-25 2018-01 /pmc/articles/PMC5734389/ /pubmed/28580679 http://dx.doi.org/10.1002/pro.3207 Text en © 2017 The Authors Protein Science published by Wiley Periodicals, Inc. on behalf of The Protein Society This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Tools for Protein Science
Whitmore, Lee
Mavridis, Lazaros
Wallace, B.A.
Janes, Robert W.
DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy
title DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy
title_full DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy
title_fullStr DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy
title_full_unstemmed DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy
title_short DichroMatch at the protein circular dichroism data bank (DM@PCDDB): A web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy
title_sort dichromatch at the protein circular dichroism data bank (dm@pcddb): a web‐based tool for identifying protein nearest neighbors using circular dichroism spectroscopy
topic Tools for Protein Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5734389/
https://www.ncbi.nlm.nih.gov/pubmed/28580679
http://dx.doi.org/10.1002/pro.3207
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