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Model-free inference of direct network interactions from nonlinear collective dynamics
The topology of interactions in network dynamical systems fundamentally underlies their function. Accelerating technological progress creates massively available data about collective nonlinear dynamics in physical, biological, and technological systems. Detecting direct interaction patterns from th...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5736722/ https://www.ncbi.nlm.nih.gov/pubmed/29259167 http://dx.doi.org/10.1038/s41467-017-02288-4 |
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author | Casadiego, Jose Nitzan, Mor Hallerberg, Sarah Timme, Marc |
author_facet | Casadiego, Jose Nitzan, Mor Hallerberg, Sarah Timme, Marc |
author_sort | Casadiego, Jose |
collection | PubMed |
description | The topology of interactions in network dynamical systems fundamentally underlies their function. Accelerating technological progress creates massively available data about collective nonlinear dynamics in physical, biological, and technological systems. Detecting direct interaction patterns from those dynamics still constitutes a major open problem. In particular, current nonlinear dynamics approaches mostly require to know a priori a model of the (often high dimensional) system dynamics. Here we develop a model-independent framework for inferring direct interactions solely from recording the nonlinear collective dynamics generated. Introducing an explicit dependency matrix in combination with a block-orthogonal regression algorithm, the approach works reliably across many dynamical regimes, including transient dynamics toward steady states, periodic and non-periodic dynamics, and chaos. Together with its capabilities to reveal network (two point) as well as hypernetwork (e.g., three point) interactions, this framework may thus open up nonlinear dynamics options of inferring direct interaction patterns across systems where no model is known. |
format | Online Article Text |
id | pubmed-5736722 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57367222017-12-21 Model-free inference of direct network interactions from nonlinear collective dynamics Casadiego, Jose Nitzan, Mor Hallerberg, Sarah Timme, Marc Nat Commun Article The topology of interactions in network dynamical systems fundamentally underlies their function. Accelerating technological progress creates massively available data about collective nonlinear dynamics in physical, biological, and technological systems. Detecting direct interaction patterns from those dynamics still constitutes a major open problem. In particular, current nonlinear dynamics approaches mostly require to know a priori a model of the (often high dimensional) system dynamics. Here we develop a model-independent framework for inferring direct interactions solely from recording the nonlinear collective dynamics generated. Introducing an explicit dependency matrix in combination with a block-orthogonal regression algorithm, the approach works reliably across many dynamical regimes, including transient dynamics toward steady states, periodic and non-periodic dynamics, and chaos. Together with its capabilities to reveal network (two point) as well as hypernetwork (e.g., three point) interactions, this framework may thus open up nonlinear dynamics options of inferring direct interaction patterns across systems where no model is known. Nature Publishing Group UK 2017-12-19 /pmc/articles/PMC5736722/ /pubmed/29259167 http://dx.doi.org/10.1038/s41467-017-02288-4 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Casadiego, Jose Nitzan, Mor Hallerberg, Sarah Timme, Marc Model-free inference of direct network interactions from nonlinear collective dynamics |
title | Model-free inference of direct network interactions from nonlinear collective dynamics |
title_full | Model-free inference of direct network interactions from nonlinear collective dynamics |
title_fullStr | Model-free inference of direct network interactions from nonlinear collective dynamics |
title_full_unstemmed | Model-free inference of direct network interactions from nonlinear collective dynamics |
title_short | Model-free inference of direct network interactions from nonlinear collective dynamics |
title_sort | model-free inference of direct network interactions from nonlinear collective dynamics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5736722/ https://www.ncbi.nlm.nih.gov/pubmed/29259167 http://dx.doi.org/10.1038/s41467-017-02288-4 |
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