Cargando…

First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes

The RegulonDB (http://regulondb.ccg.unam.mx) team generates manually elaborated summaries about transcription factors (TFs) of Escherichia coli K-12. These texts involve considerable effort, since they summarize a diverse collection of structural, mechanistic and physiological properties of TFs and,...

Descripción completa

Detalles Bibliográficos
Autores principales:	Méndez-Cruz, Carlos-Francisco, Gama-Castro, Socorro, Mejía-Almonte, Citlalli, Castillo-Villalba, Marco-Polo, Muñiz-Rascado, Luis-José, Collado-Vides, Julio
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737074/ https://www.ncbi.nlm.nih.gov/pubmed/29220462 http://dx.doi.org/10.1093/database/bax070

Ejemplares similares

Strategies towards digital and semi-automated curation in RegulonDB
por: Rinaldi, Fabio, et al.
Publicado: (2017)

Strategies towards digital and semi-automated curation in RegulonDB
por: Rinaldi, Fabio, et al.
Publicado: (2017)

Evidence classification of high-throughput protocols and confidence integration in RegulonDB
por: Weiss, Verena, et al.
Publicado: (2013)

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
por: Gama-Castro, Socorro, et al.
Publicado: (2016)

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12
por: Santos-Zavaleta, Alberto, et al.
Publicado: (2019)

RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12
por: Tierrafría, Víctor H., et al.
Publicado: (2022)

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions
por: Salgado, Heladia, et al.
Publicado: (2006)

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
por: Gama-Castro, Socorro, et al.
Publicado: (2008)

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
por: Salgado, Heladia, et al.
Publicado: (2013)

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
por: Gama-Castro, Socorro, et al.
Publicado: (2011)

A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0
por: Santos-Zavaleta, Alberto, et al.
Publicado: (2018)

Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB
por: Beber, Moritz E., et al.
Publicado: (2016)

Similarity corpus on microbial transcriptional regulation
por: Lithgow-Serrano, Oscar, et al.
Publicado: (2019)

Improving extractive document summarization with sentence centrality
por: Gong, Shuai, et al.
Publicado: (2022)

Sensory Systems and Transcriptional Regulation in Escherichia coli
por: Femerling, Georgette, et al.
Publicado: (2022)

Advances in automatic text summarization
Publicado: (1999)

Evaluating the use of different positional strategies for sentence selection in biomedical literature summarization
por: Plaza, Laura, et al.
Publicado: (2013)

Beyond SumBasic: Task-focused summarization with sentence simplification and lexical expansion
por: Vanderwende, Lucy, et al.
Publicado: (2007)

Tracing the phylogenetic history of the Crl regulon through the Bacteria and Archaea genomes
por: Santos-Zavaleta, A., et al.
Publicado: (2019)

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes
por: González, Abel D., et al.
Publicado: (2005)

Evaluating automatic sentence alignment approaches on English-Slovak sentences
por: Forgac, Frantisek, et al.
Publicado: (2023)

Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes
por: Pérez, Abel González, et al.
Publicado: (2007)

MTL-DAS: Automatic Text Summarization for Domain Adaptation
por: Zhong, Jiang, et al.
Publicado: (2022)

Extractive single document summarization using binary differential evolution: Optimization of different sentence quality measures
por: Saini, Naveen, et al.
Publicado: (2019)

A novel centroid based sentence classification approach for extractive summarization of COVID-19 news reports
por: Banerjee, Sumanta, et al.
Publicado: (2023)

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
por: Rodríguez-Penagos, Carlos, et al.
Publicado: (2007)

Automatic summarization of soccer highlights using audio-visual descriptors
por: Raventós, A, et al.
Publicado: (2015)

DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli
por: Lemmens, Karen, et al.
Publicado: (2009)

Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties
por: Méndez-Cruz, Carlos-Francisco, et al.
Publicado: (2020)

Automatic classification of sentences to support Evidence Based Medicine
por: Kim, Su Nam, et al.
Publicado: (2011)

Automatic Grading System Using Sentence-BERT Network
por: Ndukwe, Ifeanyi G., et al.
Publicado: (2020)

An Automated Summarization Assessment Algorithm for Identifying Summarizing Strategies
por: Abdi, Asad, et al.
Publicado: (2016)

EcoCyc: a comprehensive database resource for Escherichia coli
por: Keseler, Ingrid M., et al.
Publicado: (2005)

The EcoCyc Database in 2021
por: Keseler, Ingrid M., et al.
Publicado: (2021)

MyomirDB: A unified database and server platform for muscle atrophy myomiRs, coregulatory networks and regulons
por: Gupta, Apoorv, et al.
Publicado: (2020)

Development of Genomic Sciences in Mexico: A Good Start and a Long Way to Go
por: Palacios, Rafael, et al.
Publicado: (2007)

An Automatic Multidocument Text Summarization Approach Based on Naïve Bayesian Classifier Using Timestamp Strategy
por: Ramanujam, Nedunchelian, et al.
Publicado: (2016)

The Role of Verbs in Sentence Production
por: Antón-Méndez, Inés
Publicado: (2020)

Summarizing biological networks
por: Bhowmick, Sourav S, et al.
Publicado: (2017)

The comprehensive updated regulatory network of Escherichia coli K-12
por: Salgado, Heladia, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_2193oor56jl2uufrn8ff4mfgap