Cargando…

Phylogenetic Conflict in Bears Identified by Automated Discovery of Transposable Element Insertions in Low-Coverage Genomes

Phylogenetic reconstruction from transposable elements (TEs) offers an additional perspective to study evolutionary processes. However, detecting phylogenetically informative TE insertions requires tedious experimental work, limiting the power of phylogenetic inference. Here, we analyzed the genomes...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lammers, Fritjof, Gallus, Susanne, Janke, Axel, Nilsson, Maria A.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737362/ https://www.ncbi.nlm.nih.gov/pubmed/28985298 http://dx.doi.org/10.1093/gbe/evx170

Ejemplares similares

Screening for the ancient polar bear mitochondrial genome reveals low integration of mitochondrial pseudogenes (numts) in bears
por: Lammers, Fritjof, et al.
Publicado: (2017)

Evolutionary Histories of Transposable Elements in the Genome of the Largest Living Marsupial Carnivore, the Tasmanian Devil
por: Gallus, Susanne, et al.
Publicado: (2015)

The evolutionary history of bears is characterized by gene flow across species
por: Kumar, Vikas, et al.
Publicado: (2017)

Transposable element insertions in 1000 Swedish individuals
por: Bilgrav Saether, Kristine, et al.
Publicado: (2023)

Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements
por: Levy, Asaf, et al.
Publicado: (2010)

Patterns of Transposable Element Expression and Insertion in Cancer
por: Clayton, Evan A., et al.
Publicado: (2016)

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development
por: You, Frank M., et al.
Publicado: (2010)

When Genomics Is Not Enough: Experimental Evidence for a Decrease in LINE-1 Activity During the Evolution of Australian Marsupials
por: Gallus, Susanne, et al.
Publicado: (2016)

An Age-of-Allele Test of Neutrality for Transposable Element Insertions
por: Blumenstiel, Justin P., et al.
Publicado: (2014)

Transposable elements: genome innovation, chromosome diversity, and centromere conflict
por: Klein, Savannah J., et al.
Publicado: (2018)

In silico Phylogenetic Analysis of hAT Transposable Elements in Plants
por: Karakülah, Gökhan, et al.
Publicado: (2018)

Whole-genome sequencing of the blue whale and other rorquals finds signatures for introgressive gene flow
por: Árnason, Úlfur, et al.
Publicado: (2018)

Mobilizing diversity: transposable element insertions in genetic variation and disease
por: O'Donnell, Kathryn A, et al.
Publicado: (2010)

The Effect of Transposable Element Insertions on Gene Expression Evolution in Rodents
por: Pereira, Vini, et al.
Publicado: (2009)

A Transposable Element Insertion Confers Xenobiotic Resistance in Drosophila
por: Mateo, Lidia, et al.
Publicado: (2014)

TET enzymes: double agents in the transposable element–host genome conflict
por: Gerdes, Patricia, et al.
Publicado: (2016)

An automated homology-based approach for identifying transposable elements
por: Kennedy, Ryan C, et al.
Publicado: (2011)

Methodologies for the De novo Discovery of Transposable Element Families
por: Storer, Jessica M., et al.
Publicado: (2022)

A computational approach to identify transposable element insertions in cancer cells
por: Silva, Israel T, et al.
Publicado: (2011)

Contrasting Patterns of Transposable Element Insertions in Drosophila Heat-Shock Promoters
por: Haney, Robert A., et al.
Publicado: (2009)

Transposable Element Insertions in Long Intergenic Non-Coding RNA Genes
por: Kannan, Sivakumar, et al.
Publicado: (2015)

Transposable element insertions in fission yeast drive adaptation to environmental stress
por: Esnault, Caroline, et al.
Publicado: (2019)

A transposable element insertion is associated with an alternative life history strategy
por: Woronik, Alyssa, et al.
Publicado: (2019)

Comprehensive identification of transposable element insertions using multiple sequencing technologies
por: Chu, Chong, et al.
Publicado: (2021)

Discovery and annotation of a novel transposable element family in Gossypium
por: Lu, Hejun, et al.
Publicado: (2018)

A proposal for the reference-based annotation of de novo transposable element insertions
por: Bergman, Casey M.
Publicado: (2012)

A transposable element insertion in APOB causes cholesterol deficiency in Holstein cattle
por: Menzi, F., et al.
Publicado: (2016)

Maize Transposable Elements Ac/Ds as Insertion Mutagenesis Tools in Candida albicans
por: Mielich, Kevin, et al.
Publicado: (2018)

Double insertion of transposable elements provides a substrate for the evolution of satellite DNA
por: McGurk, Michael P., et al.
Publicado: (2018)

Genome-Wide Estimates of Transposable Element Insertion and Deletion Rates in Drosophila Melanogaster
por: Adrion, Jeffrey R., et al.
Publicado: (2017)

Whole-genome variation of transposable element insertions in a maize diversity panel
por: Qiu, Yinjie, et al.
Publicado: (2021)

The insertion and dysregulation of transposable elements in osteosarcoma and their association with patient event-free survival
por: Wang, Chao, et al.
Publicado: (2022)

Analysis of Transposable Elements in the Genome of Asparagus officinalis from High Coverage Sequence Data
por: Li, Shu-Fen, et al.
Publicado: (2014)

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
por: Bergman, Casey M, et al.
Publicado: (2006)

Unusual misregulation of RNA splicing caused by insertion of a transposable element into the T (Brachyury) locus
por: Goldin, Sarah N, et al.
Publicado: (2003)

The Dominance Effect of the Adaptive Transposable Element Insertion Bari-Jheh Depends on the Genetic Background
por: Guio, Lain, et al.
Publicado: (2015)

Interspecies Insertion Polymorphism Analysis Reveals Recent Activity of Transposable Elements in Extant Coelacanths
por: Naville, Magali, et al.
Publicado: (2014)

Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster
por: Guio, Lain, et al.
Publicado: (2018)

EpiTEome: Simultaneous detection of transposable element insertion sites and their DNA methylation levels
por: Daron, Josquin, et al.
Publicado: (2017)

Population‐specific dynamics and selection patterns of transposable element insertions in European natural populations
por: Lerat, Emmanuelle, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_g4q9ft6pmjmjr7gcealrndufd3