Cargando…
ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data
RNA-binding proteins (RBPs) play an important role in RNA post-transcriptional regulation and recognize target RNAs via sequence-structure motifs. The extent to which RNA structure influences protein binding in the presence or absence of a sequence motif is still poorly understood. Existing RNA moti...
Autores principales: | Heller, David, Krestel, Ralf, Ohler, Uwe, Vingron, Martin, Marsico, Annalisa |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737366/ https://www.ncbi.nlm.nih.gov/pubmed/28977546 http://dx.doi.org/10.1093/nar/gkx756 |
Ejemplares similares
-
Identification of divergent WH2 motifs by HMM-HMM alignments
por: Weiß, Clemens Leonard, et al.
Publicado: (2015) -
TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs
por: Bressin, Annkatrin, et al.
Publicado: (2019) -
Neural networks: computers with intuition
por: Brunak, Søren, et al.
Publicado: (1990) -
CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses
por: Roider, Helge G., et al.
Publicado: (2009) -
Motif programming manual
por: Ferguson, Paula M, et al.
Publicado: (1994)