Cargando…

paraGSEA: a scalable approach for large-scale gene expression profiling

More studies have been conducted using gene expression similarity to identify functional connections among genes, diseases and drugs. Gene Set Enrichment Analysis (GSEA) is a powerful analytical method for interpreting gene expression data. However, due to its enormous computational overhead in the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Peng, Shaoliang, Yang, Shunyun, Bo, Xiaochen, Li, Fei
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737394/ https://www.ncbi.nlm.nih.gov/pubmed/28973463 http://dx.doi.org/10.1093/nar/gkx679

Ejemplares similares

Sequence biases in large scale gene expression profiling data
por: Siddiqui, Asim S., et al.
Publicado: (2006)

Gene expression profiling of single cells on large-scale oligonucleotide arrays
por: Hartmann, Claudia H., et al.
Publicado: (2006)

Large-scale profiling of microRNAs for The Cancer Genome Atlas
por: Chu, Andy, et al.
Publicado: (2016)

Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering
por: Sun, Peng, et al.
Publicado: (2014)

An accurate and efficient method for large-scale SSR genotyping and applications
por: Li, Lun, et al.
Publicado: (2017)

Gene expression variability and the analysis of large-scale RNA-seq studies with the MDSeq
por: Ran, Di, et al.
Publicado: (2017)

A scalable method for multiplex LED-controlled synthesis of DNA in capillaries
por: Blair, Sarah, et al.
Publicado: (2006)

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
por: Liao, Yang, et al.
Publicado: (2013)

Computational and molecular tools for scalable rAAV-mediated genome editing
por: Stoimenov, Ivaylo, et al.
Publicado: (2015)

Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics
por: Huang, Yiming, et al.
Publicado: (2020)

Deep integrative models for large-scale human genomics
por: Sigurdsson, Arnór I, et al.
Publicado: (2023)

Reverse engineering and analysis of large genome-scale gene networks
por: Aluru, Maneesha, et al.
Publicado: (2013)

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases
por: Lahti, Leo, et al.
Publicado: (2013)

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes
por: Boyd, Joel A, et al.
Publicado: (2018)

Effective and scalable single-cell data alignment with non-linear canonical correlation analysis
por: Hu, Jialu, et al.
Publicado: (2021)

QuartetS: a fast and accurate algorithm for large-scale orthology detection
por: Yu, Chenggang, et al.
Publicado: (2011)

FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads
por: Zhang, Gong, et al.
Publicado: (2012)

Engineered TAL Effector modulators for the large-scale gain-of-function screening
por: Zhang, Hanshuo, et al.
Publicado: (2014)

Fast production of homogeneous recombinant RNA—towards large-scale production of RNA
por: Nelissen, Frank H.T., et al.
Publicado: (2012)

Single-cell gene regulation network inference by large-scale data integration
por: Dong, Xin, et al.
Publicado: (2022)

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping
por: Bock, Christoph, et al.
Publicado: (2008)

Fast fitting to low resolution density maps: elucidating large-scale motions of the ribosome
por: Flores, Samuel Coulbourn
Publicado: (2014)

Large-scale modeling of condition-specific gene regulatory networks by information integration and inference
por: Ellwanger, Daniel Christian, et al.
Publicado: (2014)

Identification of large-scale genomic variation in cancer genomes using in silico reference models
por: Killcoyne, Sarah, et al.
Publicado: (2016)

Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers
por: Briggs, Adrian W., et al.
Publicado: (2012)

A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
por: Parameswaran, Poornima, et al.
Publicado: (2007)

Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs
por: Mahmood, Khalid, et al.
Publicado: (2012)

Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data
por: Trieu, Tuan, et al.
Publicado: (2014)

A piggyBac-based reporter system for scalable in vitro and in vivo analysis of 3′ untranslated region-mediated gene regulation
por: Chaudhury, Arindam, et al.
Publicado: (2014)

Efficient generation of large-scale genome-modified mice using gRNA and CAS9 endonuclease
por: Fujii, Wataru, et al.
Publicado: (2013)

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
por: Azad, Ariful, et al.
Publicado: (2018)

Refined sgRNA efficacy prediction improves large- and small-scale CRISPR–Cas9 applications
por: Labuhn, Maurice, et al.
Publicado: (2018)

TFforge utilizes large-scale binding site divergence to identify transcriptional regulators involved in phenotypic differences
por: Langer, Björn E, et al.
Publicado: (2019)

Robust and rapid algorithms facilitate large-scale whole genome sequencing downstream analysis in an integrative framework
por: Li, Miaoxin, et al.
Publicado: (2017)

A high-throughput approach to profile RNA structure
por: Delli Ponti, Riccardo, et al.
Publicado: (2017)

Latent cellular analysis robustly reveals subtle diversity in large-scale single-cell RNA-seq data
por: Cheng, Changde, et al.
Publicado: (2019)

Large-scale evolutionary surveillance of the 2009 H1N1 influenza A virus using resequencing arrays
por: Lee, Charlie Wah Heng, et al.
Publicado: (2010)

RIsearch2: suffix array-based large-scale prediction of RNA–RNA interactions and siRNA off-targets
por: Alkan, Ferhat, et al.
Publicado: (2017)

Wiring miRNAs to pathways: a topological approach to integrate miRNA and mRNA expression profiles
por: Calura, Enrica, et al.
Publicado: (2014)

A simple and effective chromosome modification method for large-scale deletion of genome sequences and identification of essential genes in fission yeast
por: Hirashima, Kyotaro, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_hlosglovelt0uva28v7ijlh9u2