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De novo design and synthesis of a 30-cistron translation-factor module

Two of the many goals of synthetic biology are synthesizing large biochemical systems and simplifying their assembly. While several genes have been assembled together by modular idempotent cloning, it is unclear if such simplified strategies scale to very large constructs for expression and purifica...

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Autores principales: Shepherd, Tyson R., Du, Liping, Liljeruhm, Josefine, Samudyata, Wang, Jinfan, Sjödin, Marcus O.D., Wetterhall, Magnus, Yomo, Tetsuya, Forster, Anthony C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737471/
https://www.ncbi.nlm.nih.gov/pubmed/28977654
http://dx.doi.org/10.1093/nar/gkx753
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author Shepherd, Tyson R.
Du, Liping
Liljeruhm, Josefine
Samudyata,
Wang, Jinfan
Sjödin, Marcus O.D.
Wetterhall, Magnus
Yomo, Tetsuya
Forster, Anthony C.
author_facet Shepherd, Tyson R.
Du, Liping
Liljeruhm, Josefine
Samudyata,
Wang, Jinfan
Sjödin, Marcus O.D.
Wetterhall, Magnus
Yomo, Tetsuya
Forster, Anthony C.
author_sort Shepherd, Tyson R.
collection PubMed
description Two of the many goals of synthetic biology are synthesizing large biochemical systems and simplifying their assembly. While several genes have been assembled together by modular idempotent cloning, it is unclear if such simplified strategies scale to very large constructs for expression and purification of whole pathways. Here we synthesize from oligodeoxyribonucleotides a completely de-novo-designed, 58-kb multigene DNA. This BioBrick plasmid insert encodes 30 of the 31 translation factors of the PURE translation system, each His-tagged and in separate transcription cistrons. Dividing the insert between three high-copy expression plasmids enables the bulk purification of the aminoacyl-tRNA synthetases and translation factors necessary for affordable, scalable reconstitution of an in vitro transcription and translation system, PURE 3.0.
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spelling pubmed-57374712018-01-09 De novo design and synthesis of a 30-cistron translation-factor module Shepherd, Tyson R. Du, Liping Liljeruhm, Josefine Samudyata, Wang, Jinfan Sjödin, Marcus O.D. Wetterhall, Magnus Yomo, Tetsuya Forster, Anthony C. Nucleic Acids Res Synthetic Biology and Bioengineering Two of the many goals of synthetic biology are synthesizing large biochemical systems and simplifying their assembly. While several genes have been assembled together by modular idempotent cloning, it is unclear if such simplified strategies scale to very large constructs for expression and purification of whole pathways. Here we synthesize from oligodeoxyribonucleotides a completely de-novo-designed, 58-kb multigene DNA. This BioBrick plasmid insert encodes 30 of the 31 translation factors of the PURE translation system, each His-tagged and in separate transcription cistrons. Dividing the insert between three high-copy expression plasmids enables the bulk purification of the aminoacyl-tRNA synthetases and translation factors necessary for affordable, scalable reconstitution of an in vitro transcription and translation system, PURE 3.0. Oxford University Press 2017-10-13 2017-09-04 /pmc/articles/PMC5737471/ /pubmed/28977654 http://dx.doi.org/10.1093/nar/gkx753 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Synthetic Biology and Bioengineering
Shepherd, Tyson R.
Du, Liping
Liljeruhm, Josefine
Samudyata,
Wang, Jinfan
Sjödin, Marcus O.D.
Wetterhall, Magnus
Yomo, Tetsuya
Forster, Anthony C.
De novo design and synthesis of a 30-cistron translation-factor module
title De novo design and synthesis of a 30-cistron translation-factor module
title_full De novo design and synthesis of a 30-cistron translation-factor module
title_fullStr De novo design and synthesis of a 30-cistron translation-factor module
title_full_unstemmed De novo design and synthesis of a 30-cistron translation-factor module
title_short De novo design and synthesis of a 30-cistron translation-factor module
title_sort de novo design and synthesis of a 30-cistron translation-factor module
topic Synthetic Biology and Bioengineering
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737471/
https://www.ncbi.nlm.nih.gov/pubmed/28977654
http://dx.doi.org/10.1093/nar/gkx753
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