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Effects of interactions between common genetic variants and smoking on colorectal cancer

BACKGROUND: Although genome-wide association studies (GWAS) have identified variants in approximately 40 susceptibility loci for colorectal cancer (CRC), there are few studies on the interactions between identified single-nucleotide polymorphisms (SNPs) and lifestyle risk factors. We evaluated wheth...

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Autores principales: Song, Nan, Shin, Aesun, Jung, Hye Soo, Oh, Jae Hwan, Kim, Jeongseon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737484/
https://www.ncbi.nlm.nih.gov/pubmed/29258461
http://dx.doi.org/10.1186/s12885-017-3886-0
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author Song, Nan
Shin, Aesun
Jung, Hye Soo
Oh, Jae Hwan
Kim, Jeongseon
author_facet Song, Nan
Shin, Aesun
Jung, Hye Soo
Oh, Jae Hwan
Kim, Jeongseon
author_sort Song, Nan
collection PubMed
description BACKGROUND: Although genome-wide association studies (GWAS) have identified variants in approximately 40 susceptibility loci for colorectal cancer (CRC), there are few studies on the interactions between identified single-nucleotide polymorphisms (SNPs) and lifestyle risk factors. We evaluated whether smoking could modify associations between these genetic variants and CRC risk. METHODS: A total of 703 CRC patients and 1406 healthy controls were included in this case-control study from the National Cancer Center in Korea. Thirty CRC susceptibility SNPs identified in previous GWAS were genotyped. A logistic regression model was used to examine associations between the SNPs and smoking behaviors by sex. The interaction was estimated by including an additional interaction term in the model. RESULTS: In men, an increased CRC risk was observed for longer durations (OR(>28 vs. ≤28years) = 1.49 (95% CI = 1.11–1.98)), greater quantities (OR(≥20 vs. <20cigarettes/day) = 2.12 (1.61–2.79)), and longer pack-years of smoking (OR(≥21 vs. <21pack-years) = 1.78 (1.35–2.35)). In women, longer pack-years of smoking significantly increased CRC risk (OR(≥5 vs. <5pack-years) = 6.11 (1.10–34.00)). Moreover, there were significant interactions between smoking status and the polymorphisms rs1957636 at 14q22.3 (P (interaction) = 5.5 × 10(−4)) and rs4813802 at 20p12.3 (P (interaction) = 0.04) in men. Interactions between smoking status and the rs6687758 at 1q41 (P (interaction) = 0.03), duration and the rs174537 at 11q12.2 (P (interaction) = 0.05), and pack-years and the rs4813802 (P (interaction) = 0.04) were also found in women. CONCLUSIONS: Associations between susceptibility SNPs and CRC risk may be modified by smoking behaviors, supporting the existence of gene-smoking interactions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12885-017-3886-0) contains supplementary material, which is available to authorized users.
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spelling pubmed-57374842017-12-21 Effects of interactions between common genetic variants and smoking on colorectal cancer Song, Nan Shin, Aesun Jung, Hye Soo Oh, Jae Hwan Kim, Jeongseon BMC Cancer Research Article BACKGROUND: Although genome-wide association studies (GWAS) have identified variants in approximately 40 susceptibility loci for colorectal cancer (CRC), there are few studies on the interactions between identified single-nucleotide polymorphisms (SNPs) and lifestyle risk factors. We evaluated whether smoking could modify associations between these genetic variants and CRC risk. METHODS: A total of 703 CRC patients and 1406 healthy controls were included in this case-control study from the National Cancer Center in Korea. Thirty CRC susceptibility SNPs identified in previous GWAS were genotyped. A logistic regression model was used to examine associations between the SNPs and smoking behaviors by sex. The interaction was estimated by including an additional interaction term in the model. RESULTS: In men, an increased CRC risk was observed for longer durations (OR(>28 vs. ≤28years) = 1.49 (95% CI = 1.11–1.98)), greater quantities (OR(≥20 vs. <20cigarettes/day) = 2.12 (1.61–2.79)), and longer pack-years of smoking (OR(≥21 vs. <21pack-years) = 1.78 (1.35–2.35)). In women, longer pack-years of smoking significantly increased CRC risk (OR(≥5 vs. <5pack-years) = 6.11 (1.10–34.00)). Moreover, there were significant interactions between smoking status and the polymorphisms rs1957636 at 14q22.3 (P (interaction) = 5.5 × 10(−4)) and rs4813802 at 20p12.3 (P (interaction) = 0.04) in men. Interactions between smoking status and the rs6687758 at 1q41 (P (interaction) = 0.03), duration and the rs174537 at 11q12.2 (P (interaction) = 0.05), and pack-years and the rs4813802 (P (interaction) = 0.04) were also found in women. CONCLUSIONS: Associations between susceptibility SNPs and CRC risk may be modified by smoking behaviors, supporting the existence of gene-smoking interactions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12885-017-3886-0) contains supplementary material, which is available to authorized users. BioMed Central 2017-12-19 /pmc/articles/PMC5737484/ /pubmed/29258461 http://dx.doi.org/10.1186/s12885-017-3886-0 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Song, Nan
Shin, Aesun
Jung, Hye Soo
Oh, Jae Hwan
Kim, Jeongseon
Effects of interactions between common genetic variants and smoking on colorectal cancer
title Effects of interactions between common genetic variants and smoking on colorectal cancer
title_full Effects of interactions between common genetic variants and smoking on colorectal cancer
title_fullStr Effects of interactions between common genetic variants and smoking on colorectal cancer
title_full_unstemmed Effects of interactions between common genetic variants and smoking on colorectal cancer
title_short Effects of interactions between common genetic variants and smoking on colorectal cancer
title_sort effects of interactions between common genetic variants and smoking on colorectal cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737484/
https://www.ncbi.nlm.nih.gov/pubmed/29258461
http://dx.doi.org/10.1186/s12885-017-3886-0
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