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Effects of interactions between common genetic variants and smoking on colorectal cancer
BACKGROUND: Although genome-wide association studies (GWAS) have identified variants in approximately 40 susceptibility loci for colorectal cancer (CRC), there are few studies on the interactions between identified single-nucleotide polymorphisms (SNPs) and lifestyle risk factors. We evaluated wheth...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737484/ https://www.ncbi.nlm.nih.gov/pubmed/29258461 http://dx.doi.org/10.1186/s12885-017-3886-0 |
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author | Song, Nan Shin, Aesun Jung, Hye Soo Oh, Jae Hwan Kim, Jeongseon |
author_facet | Song, Nan Shin, Aesun Jung, Hye Soo Oh, Jae Hwan Kim, Jeongseon |
author_sort | Song, Nan |
collection | PubMed |
description | BACKGROUND: Although genome-wide association studies (GWAS) have identified variants in approximately 40 susceptibility loci for colorectal cancer (CRC), there are few studies on the interactions between identified single-nucleotide polymorphisms (SNPs) and lifestyle risk factors. We evaluated whether smoking could modify associations between these genetic variants and CRC risk. METHODS: A total of 703 CRC patients and 1406 healthy controls were included in this case-control study from the National Cancer Center in Korea. Thirty CRC susceptibility SNPs identified in previous GWAS were genotyped. A logistic regression model was used to examine associations between the SNPs and smoking behaviors by sex. The interaction was estimated by including an additional interaction term in the model. RESULTS: In men, an increased CRC risk was observed for longer durations (OR(>28 vs. ≤28years) = 1.49 (95% CI = 1.11–1.98)), greater quantities (OR(≥20 vs. <20cigarettes/day) = 2.12 (1.61–2.79)), and longer pack-years of smoking (OR(≥21 vs. <21pack-years) = 1.78 (1.35–2.35)). In women, longer pack-years of smoking significantly increased CRC risk (OR(≥5 vs. <5pack-years) = 6.11 (1.10–34.00)). Moreover, there were significant interactions between smoking status and the polymorphisms rs1957636 at 14q22.3 (P (interaction) = 5.5 × 10(−4)) and rs4813802 at 20p12.3 (P (interaction) = 0.04) in men. Interactions between smoking status and the rs6687758 at 1q41 (P (interaction) = 0.03), duration and the rs174537 at 11q12.2 (P (interaction) = 0.05), and pack-years and the rs4813802 (P (interaction) = 0.04) were also found in women. CONCLUSIONS: Associations between susceptibility SNPs and CRC risk may be modified by smoking behaviors, supporting the existence of gene-smoking interactions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12885-017-3886-0) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5737484 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57374842017-12-21 Effects of interactions between common genetic variants and smoking on colorectal cancer Song, Nan Shin, Aesun Jung, Hye Soo Oh, Jae Hwan Kim, Jeongseon BMC Cancer Research Article BACKGROUND: Although genome-wide association studies (GWAS) have identified variants in approximately 40 susceptibility loci for colorectal cancer (CRC), there are few studies on the interactions between identified single-nucleotide polymorphisms (SNPs) and lifestyle risk factors. We evaluated whether smoking could modify associations between these genetic variants and CRC risk. METHODS: A total of 703 CRC patients and 1406 healthy controls were included in this case-control study from the National Cancer Center in Korea. Thirty CRC susceptibility SNPs identified in previous GWAS were genotyped. A logistic regression model was used to examine associations between the SNPs and smoking behaviors by sex. The interaction was estimated by including an additional interaction term in the model. RESULTS: In men, an increased CRC risk was observed for longer durations (OR(>28 vs. ≤28years) = 1.49 (95% CI = 1.11–1.98)), greater quantities (OR(≥20 vs. <20cigarettes/day) = 2.12 (1.61–2.79)), and longer pack-years of smoking (OR(≥21 vs. <21pack-years) = 1.78 (1.35–2.35)). In women, longer pack-years of smoking significantly increased CRC risk (OR(≥5 vs. <5pack-years) = 6.11 (1.10–34.00)). Moreover, there were significant interactions between smoking status and the polymorphisms rs1957636 at 14q22.3 (P (interaction) = 5.5 × 10(−4)) and rs4813802 at 20p12.3 (P (interaction) = 0.04) in men. Interactions between smoking status and the rs6687758 at 1q41 (P (interaction) = 0.03), duration and the rs174537 at 11q12.2 (P (interaction) = 0.05), and pack-years and the rs4813802 (P (interaction) = 0.04) were also found in women. CONCLUSIONS: Associations between susceptibility SNPs and CRC risk may be modified by smoking behaviors, supporting the existence of gene-smoking interactions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12885-017-3886-0) contains supplementary material, which is available to authorized users. BioMed Central 2017-12-19 /pmc/articles/PMC5737484/ /pubmed/29258461 http://dx.doi.org/10.1186/s12885-017-3886-0 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Song, Nan Shin, Aesun Jung, Hye Soo Oh, Jae Hwan Kim, Jeongseon Effects of interactions between common genetic variants and smoking on colorectal cancer |
title | Effects of interactions between common genetic variants and smoking on colorectal cancer |
title_full | Effects of interactions between common genetic variants and smoking on colorectal cancer |
title_fullStr | Effects of interactions between common genetic variants and smoking on colorectal cancer |
title_full_unstemmed | Effects of interactions between common genetic variants and smoking on colorectal cancer |
title_short | Effects of interactions between common genetic variants and smoking on colorectal cancer |
title_sort | effects of interactions between common genetic variants and smoking on colorectal cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737484/ https://www.ncbi.nlm.nih.gov/pubmed/29258461 http://dx.doi.org/10.1186/s12885-017-3886-0 |
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