Automated assembly of species metabolomes through data submission into a public repository

Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data re...

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Autores principales: Salek, Reza M., Conesa, Pablo, Cochrane, Keeva, Haug, Kenneth, Williams, Mark, Kale, Namrata, Moreno, Pablo, Jayaseelan, Kalai Vanii, Macias, Jose Ramon, Nainala, Venkata chandrasekhar, Hall, Robert D., Reed, Laura K., Viant, Mark R., O’Donovan, Claire, Steinbeck, Christoph
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Commentary
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737527/
https://www.ncbi.nlm.nih.gov/pubmed/28830114
http://dx.doi.org/10.1093/gigascience/gix062
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author Salek, Reza M.
Conesa, Pablo
Cochrane, Keeva
Haug, Kenneth
Williams, Mark
Kale, Namrata
Moreno, Pablo
Jayaseelan, Kalai Vanii
Macias, Jose Ramon
Nainala, Venkata chandrasekhar
Hall, Robert D.
Reed, Laura K.
Viant, Mark R.
O’Donovan, Claire
Steinbeck, Christoph
author_facet Salek, Reza M.
Conesa, Pablo
Cochrane, Keeva
Haug, Kenneth
Williams, Mark
Kale, Namrata
Moreno, Pablo
Jayaseelan, Kalai Vanii
Macias, Jose Ramon
Nainala, Venkata chandrasekhar
Hall, Robert D.
Reed, Laura K.
Viant, Mark R.
O’Donovan, Claire
Steinbeck, Christoph
author_sort Salek, Reza M.
collection PubMed
description Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.
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spelling pubmed-57375272018-01-09 Automated assembly of species metabolomes through data submission into a public repository Salek, Reza M. Conesa, Pablo Cochrane, Keeva Haug, Kenneth Williams, Mark Kale, Namrata Moreno, Pablo Jayaseelan, Kalai Vanii Macias, Jose Ramon Nainala, Venkata chandrasekhar Hall, Robert D. Reed, Laura K. Viant, Mark R. O’Donovan, Claire Steinbeck, Christoph Gigascience Commentary Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions. Oxford University Press 2017-07-19 /pmc/articles/PMC5737527/ /pubmed/28830114 http://dx.doi.org/10.1093/gigascience/gix062 Text en © The Authors 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Salek, Reza M.
Conesa, Pablo
Cochrane, Keeva
Haug, Kenneth
Williams, Mark
Kale, Namrata
Moreno, Pablo
Jayaseelan, Kalai Vanii
Macias, Jose Ramon
Nainala, Venkata chandrasekhar
Hall, Robert D.
Reed, Laura K.
Viant, Mark R.
O’Donovan, Claire
Steinbeck, Christoph
Automated assembly of species metabolomes through data submission into a public repository
title Automated assembly of species metabolomes through data submission into a public repository
title_full Automated assembly of species metabolomes through data submission into a public repository
title_fullStr Automated assembly of species metabolomes through data submission into a public repository
title_full_unstemmed Automated assembly of species metabolomes through data submission into a public repository
title_short Automated assembly of species metabolomes through data submission into a public repository
title_sort automated assembly of species metabolomes through data submission into a public repository
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737527/
https://www.ncbi.nlm.nih.gov/pubmed/28830114
http://dx.doi.org/10.1093/gigascience/gix062
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